Histone_ChIP-seq_ENCSR000ANY
Histone_ChIP-seq ENCSR000ANY [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR000ANY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANY [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN867UEU|/analyses/ENCAN867UEU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF769PUA|/files/ENCFF769PUA/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8865773 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF428BQL|/files/ENCFF428BQL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 10749468 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF428BQL|/files/ENCFF428BQL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF428BQL|/files/ENCFF428BQL/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 8.72. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANY | float |
Histone_ChIP-seq_ENCSR000ANY |
Histone_ChIP-seq ENCSR000ANY [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me2"]
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[1.81, 38.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF856JNQ.bed.gz | 2.0 MB | f3a026c816e335199d83397021a83908 |
| ENCFF856JNQ.bed.gz.dvc | 101.0 B | 0651f67d9469dbdac5466083fe45b471 |
| ENCFF856JNQ.tabix.bed.gz | 901.57 KB | 57b09226df30b82bb9d5a0702a90a4cb |
| ENCFF856JNQ.tabix.bed.gz.dvc | 106.0 B | a5c66ac6ed4271648480fa0647b8496c |
| ENCFF856JNQ.tabix.bed.gz.tbi | 328.62 KB | e4452a9d4f3db89f4336445fd8c39d5a |
| ENCFF856JNQ.tabix.bed.gz.tbi.dvc | 110.0 B | c78c6d9aefaafafeb9eabfde6e5bf994 |
| genomic_resource.yaml | 3.75 KB | ed56efc0808d167318e6f78761f26713 |
| genomic_resource_original.yaml | 3.61 KB | eece81195634d8a9b63783fe35d6a79e |
| statistics/ |