Histone_ChIP-seq_ENCSR000ANX
Histone_ChIP-seq ENCSR000ANX [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR000ANX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANX [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN913NPU|/analyses/ENCAN913NPU/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN913NPU|/analyses/ENCAN913NPU/} has in progress subobject document {e9c526bc-5670-4445-b796-24a0ad21f910|/documents/e9c526bc-5670-4445-b796-24a0ad21f910/} audit_not_compliant: Processed alignments file {ENCFF457JXC|/files/ENCFF457JXC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8152869 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF579KAA|/files/ENCFF579KAA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 12757006 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF579KAA|/files/ENCFF579KAA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF579KAA|/files/ENCFF579KAA/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 7.18. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANX | float |
Histone_ChIP-seq_ENCSR000ANX |
Histone_ChIP-seq ENCSR000ANX [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K4me1"]
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[1.89, 16.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF615CKT.bed.gz | 2.38 MB | 8d5284f433c0c057cd9e94f9de025763 |
| ENCFF615CKT.bed.gz.dvc | 101.0 B | efbc82202ffbc3e9034367152caf87fe |
| ENCFF615CKT.tabix.bed.gz | 1.11 MB | c84002d678d159459f493cee7ff78122 |
| ENCFF615CKT.tabix.bed.gz.dvc | 107.0 B | 058a44f9df2ba852365b33a54ada4bc4 |
| ENCFF615CKT.tabix.bed.gz.tbi | 338.56 KB | 842ef0d3b0269c0bbdcc9f2fede9d1cf |
| ENCFF615CKT.tabix.bed.gz.tbi.dvc | 110.0 B | c07808a4b50063a339c849e23b454f6a |
| genomic_resource.yaml | 4.0 KB | 62d853046f540a6e7ed23ac39d72d13f |
| genomic_resource_original.yaml | 3.86 KB | 7f1a6b207318d372322ea45d54fac085 |
| statistics/ |