Histone_ChIP-seq_ENCSR000ANW
Histone_ChIP-seq ENCSR000ANW [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ANW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANW [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN028BGJ|/analyses/ENCAN028BGJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF474VYS|/files/ENCFF474VYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8941670 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF576SHB|/files/ENCFF576SHB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11938952 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF474VYS|/files/ENCFF474VYS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF576SHB|/files/ENCFF576SHB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF576SHB|/files/ENCFF576SHB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 7.59. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANW | float |
Histone_ChIP-seq_ENCSR000ANW |
Histone_ChIP-seq ENCSR000ANW [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H3K36me3"]
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[1.83, 16] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF286CTR.bed.gz | 2.12 MB | 6e002b51c9e0e2633d494426f264693e |
| ENCFF286CTR.bed.gz.dvc | 101.0 B | 1cd31a941ff53a9df9a8bfa1beb03e34 |
| ENCFF286CTR.tabix.bed.gz | 1.01 MB | 839ab56f06ce16844d8843b66d4f99b6 |
| ENCFF286CTR.tabix.bed.gz.dvc | 107.0 B | fae48ce2673d9e4c047c4ef9d2f570da |
| ENCFF286CTR.tabix.bed.gz.tbi | 177.42 KB | d46712a9b80ec8f2dc0edef1ac319416 |
| ENCFF286CTR.tabix.bed.gz.tbi.dvc | 110.0 B | aa586c6e1b3b05b9364e972ac1a5eec2 |
| genomic_resource.yaml | 4.4 KB | 61ba010ae8aacd44735d2fd7c44830cf |
| genomic_resource_original.yaml | 4.25 KB | 2b79eafa13c117fbc25773330e4807ec |
| statistics/ |