Histone_ChIP-seq_ENCSR000ANR
Histone_ChIP-seq ENCSR000ANR [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ANR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANR [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN089BLT|/analyses/ENCAN089BLT/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed unfiltered alignments file {ENCFF224BPX|/files/ENCFF224BPX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17816104 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed unfiltered alignments file {ENCFF436TOF|/files/ENCFF436TOF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 31767549 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF391OJZ|/files/ENCFF391OJZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.86. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF391OJZ|/files/ENCFF391OJZ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 7.39. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANR | float |
Histone_ChIP-seq_ENCSR000ANR |
Histone_ChIP-seq ENCSR000ANR [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9me3"]
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[1.59, 10.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF111IAC.bed.gz | 157.88 KB | c81c5ef2c622db03c19cdbc28c562b51 |
| ENCFF111IAC.bed.gz.dvc | 100.0 B | 6fb29ce39df694ce2d6100af2da5ed49 |
| ENCFF111IAC.tabix.bed.gz | 85.66 KB | 73c42c6c9657e2a115ef96f98eda49f2 |
| ENCFF111IAC.tabix.bed.gz.dvc | 105.0 B | d9ee4e1e54ee2b75bf8d4977b4c2e3cc |
| ENCFF111IAC.tabix.bed.gz.tbi | 62.38 KB | 973dc27d1fa4019a15203a1373a8bc0f |
| ENCFF111IAC.tabix.bed.gz.tbi.dvc | 109.0 B | e6ecac4fe2c27669da3654adedebceb0 |
| genomic_resource.yaml | 3.73 KB | ccb8ae1acf02b9df0870af460b6d4712 |
| genomic_resource_original.yaml | 3.59 KB | 59f49a7521a62eeb64dcb55f4ccc28c5 |
| statistics/ |