Histone_ChIP-seq_ENCSR000ANQ
Histone_ChIP-seq ENCSR000ANQ [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K79me2"]
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| Id: | Histone_ChIP-seq/ENCSR000ANQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANQ [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K79me2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN300PHP|/analyses/ENCAN300PHP/} has in progress subobject document {c1a31192-ad48-4543-9c3f-5c5d270a31f2|/documents/c1a31192-ad48-4543-9c3f-5c5d270a31f2/} audit_internal_action: Released analysis {ENCAN300PHP|/analyses/ENCAN300PHP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF805XIW|/files/ENCFF805XIW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 15082685 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF449HZO|/files/ENCFF449HZO/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 29261657 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me2-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF805XIW|/files/ENCFF805XIW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF805XIW|/files/ENCFF805XIW/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.87. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANQ | float |
Histone_ChIP-seq_ENCSR000ANQ |
Histone_ChIP-seq ENCSR000ANQ [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K79me2"]
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[1.88, 27] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF968SFX.bed.gz | 2.27 MB | 3706b6327934eb0d973721e3d05a6308 |
| ENCFF968SFX.bed.gz.dvc | 101.0 B | d4fd69bcb88d72cf0e315a1d6a74b7a2 |
| ENCFF968SFX.tabix.bed.gz | 1.09 MB | 6f69d91d25a25a2b6c9b8193169f5280 |
| ENCFF968SFX.tabix.bed.gz.dvc | 107.0 B | 91784bba486e8b0755aa18850e014460 |
| ENCFF968SFX.tabix.bed.gz.tbi | 123.85 KB | 358ce4a1ef31fbf123ec16984f75ca1d |
| ENCFF968SFX.tabix.bed.gz.tbi.dvc | 110.0 B | 5acd2ea36c7e9d03744e67d0d9aa614c |
| genomic_resource.yaml | 3.99 KB | f57b9d1259b2cd5cf32ac68744e7f84e |
| genomic_resource_original.yaml | 3.84 KB | ec59c0fd8b97cc002b7b0ff70406899b |
| statistics/ |