Resource
| Id | Histone_ChIP-seq/ENCSR000ANM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANM [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN844ZIN|/analyses/ENCAN844ZIN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF252FPC|/files/ENCFF252FPC/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6880645 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF756EUI|/files/ENCFF756EUI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9286427 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANM | float |
Histone_ChIP-seq_ENCSR000ANM |
Histone_ChIP-seq ENCSR000ANM [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H4K20me1"]
|
 |
[1.93, 13.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 6360602 | 0.20% | 17850 |
| chr1 | 676839 | 0.27% | 1780 |
| chr2 | 497300 | 0.21% | 1392 |
| chr3 | 356035 | 0.18% | 1061 |
| chr4 | 156920 | 0.08% | 493 |
| chr5 | 368052 | 0.20% | 1021 |
| chr6 | 236204 | 0.14% | 725 |
| chr7 | 271814 | 0.17% | 826 |
| chr8 | 180257 | 0.12% | 589 |
| chr9 | 274078 | 0.20% | 769 |
| chr10 | 294869 | 0.22% | 909 |
| chr11 | 423015 | 0.31% | 1125 |
| chr12 | 271591 | 0.20% | 781 |
| chr13 | 115401 | 0.10% | 343 |
| chr14 | 215893 | 0.20% | 599 |
| chr15 | 181254 | 0.18% | 527 |
| chr16 | 352016 | 0.39% | 917 |
| chr17 | 433688 | 0.52% | 1142 |
| chr18 | 96255 | 0.12% | 289 |
| chr19 | 327746 | 0.56% | 802 |
| chr20 | 270719 | 0.42% | 762 |
| chr21 | 111447 | 0.24% | 317 |
| chr22 | 205168 | 0.40% | 551 |
| chrX | 40409 | 0.03% | 119 |
| chrY | 3632 | 0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 17850 | 160 | 7376 | 356.34 | 280 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF456ASP.bed.gz | 345.47 KB | 74bab2b20653983d377c8197dcbed79d |
| ENCFF456ASP.tabix.bed.gz | 176.41 KB | 51bec32d79452828bb6bbc9df0e81ee6 |
| ENCFF456ASP.tabix.bed.gz.tbi | 70.7 KB | 2d18e775e9d7e4e0cd3d900435350ed8 |
| genomic_resource.yaml | 2.48 KB | bdb3bc4ad1071bdde36013bf2cc27b2c |
| statistics/ |