Histone_ChIP-seq_ENCSR000ANL
Histone_ChIP-seq ENCSR000ANL [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR000ANL |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANL [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN146CTM|/analyses/ENCAN146CTM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF341TWS|/files/ENCFF341TWS/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6615124 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF506AAD|/files/ENCFF506AAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 7243775 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF506AAD|/files/ENCFF506AAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF506AAD|/files/ENCFF506AAD/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 6.79. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANL | float |
Histone_ChIP-seq_ENCSR000ANL |
Histone_ChIP-seq ENCSR000ANL [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K9ac"]
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[1.83, 76] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF245NIW.bed.gz | 1.03 MB | 18938e3b36f541c16eeeb7627361fd28 |
| ENCFF245NIW.bed.gz.dvc | 101.0 B | e0dee1592132b18e74c120cad7c4f589 |
| ENCFF245NIW.tabix.bed.gz | 481.9 KB | c1a14cb3aade49c253308a3f2af3183f |
| ENCFF245NIW.tabix.bed.gz.dvc | 106.0 B | d570859019ddbfd587c6e617770b5692 |
| ENCFF245NIW.tabix.bed.gz.tbi | 195.03 KB | a034c31b683c77979bb7f8168acd3761 |
| ENCFF245NIW.tabix.bed.gz.tbi.dvc | 110.0 B | 181b05a0405d4c0ada27c0dbabb5bdb1 |
| genomic_resource.yaml | 3.73 KB | 6d54b63261cd50ad9c6ab938d07dbd8f |
| genomic_resource_original.yaml | 3.59 KB | a04dc2424be1663ce5ae0bda0758d1c9 |
| statistics/ |