Resource
| Id | Histone_ChIP-seq/ENCSR000ANJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANJ [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN253XGW|/analyses/ENCAN253XGW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN253XGW|/analyses/ENCAN253XGW/} has in progress subobject document {3e2dc527-c37d-4c1f-a60d-3ec14913ffe6|/documents/3e2dc527-c37d-4c1f-a60d-3ec14913ffe6/} audit_not_compliant: Processed alignments file {ENCFF976IIM|/files/ENCFF976IIM/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 6434801 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF764HBL|/files/ENCFF764HBL/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 17868990 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANJ | float |
Histone_ChIP-seq_ENCSR000ANJ |
Histone_ChIP-seq ENCSR000ANJ [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K4me2"]
|
 |
[1.82, 29.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59575776 | 1.85% | 92887 |
| chr1 | 5662593 | 2.27% | 8707 |
| chr2 | 4988636 | 2.06% | 7858 |
| chr3 | 3974052 | 2.00% | 6118 |
| chr4 | 2969363 | 1.56% | 4571 |
| chr5 | 3274405 | 1.80% | 5078 |
| chr6 | 3970092 | 2.32% | 6053 |
| chr7 | 2845744 | 1.79% | 4654 |
| chr8 | 2520070 | 1.74% | 4007 |
| chr9 | 2568605 | 1.86% | 3997 |
| chr10 | 2937795 | 2.20% | 4503 |
| chr11 | 3027163 | 2.24% | 4561 |
| chr12 | 3235019 | 2.43% | 4836 |
| chr13 | 1687370 | 1.48% | 2664 |
| chr14 | 1890726 | 1.77% | 2885 |
| chr15 | 2037607 | 2.00% | 3194 |
| chr16 | 1770303 | 1.96% | 2780 |
| chr17 | 2722498 | 3.27% | 4211 |
| chr18 | 1151587 | 1.43% | 1739 |
| chr19 | 1947897 | 3.32% | 3075 |
| chr20 | 1318812 | 2.05% | 2149 |
| chr21 | 717071 | 1.54% | 1133 |
| chr22 | 1023256 | 2.01% | 1612 |
| chrX | 1285551 | 0.82% | 2403 |
| chrY | 49561 | 0.09% | 99 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 92887 | 155 | 14987 | 641.38 | 447 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF554YVU.bed.gz | 2.03 MB | a2fa7578f7c738dca53a1a9f67b45a7b |
| ENCFF554YVU.tabix.bed.gz | 970.33 KB | fa01821fe94d662ba3f542e039c55da7 |
| ENCFF554YVU.tabix.bed.gz.tbi | 320.62 KB | 8c44e9c70221064320c24b6334cb3f8c |
| genomic_resource.yaml | 2.71 KB | 4712ed7bb6b1a8581bec306b43e98ca5 |
| statistics/ |