Resource
| Id | Histone_ChIP-seq/ENCSR000ANG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ANG [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN712CZZ|/analyses/ENCAN712CZZ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF462BRB|/files/ENCFF462BRB/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8952259 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF232HUV|/files/ENCFF232HUV/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6718809 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANG | float |
Histone_ChIP-seq_ENCSR000ANG |
Histone_ChIP-seq ENCSR000ANG [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27me3"]
|
 |
[1.87, 13.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11956997 | 0.37% | 39272 |
| chr1 | 1119419 | 0.45% | 3610 |
| chr2 | 1016657 | 0.42% | 3314 |
| chr3 | 709410 | 0.36% | 2387 |
| chr4 | 538944 | 0.28% | 1793 |
| chr5 | 664056 | 0.37% | 2169 |
| chr6 | 755501 | 0.44% | 2488 |
| chr7 | 553880 | 0.35% | 1807 |
| chr8 | 490634 | 0.34% | 1697 |
| chr9 | 604466 | 0.44% | 1939 |
| chr10 | 653717 | 0.49% | 2170 |
| chr11 | 764408 | 0.57% | 2537 |
| chr12 | 486940 | 0.37% | 1614 |
| chr13 | 326779 | 0.29% | 1087 |
| chr14 | 362671 | 0.34% | 1172 |
| chr15 | 448358 | 0.44% | 1450 |
| chr16 | 269531 | 0.30% | 915 |
| chr17 | 619063 | 0.74% | 1928 |
| chr17_GL000205v2_random | 1563 | 0.84% | 3 |
| chr18 | 305522 | 0.38% | 992 |
| chr19 | 307699 | 0.52% | 978 |
| chr20 | 488264 | 0.76% | 1624 |
| chr21 | 187264 | 0.40% | 630 |
| chr22 | 259367 | 0.51% | 876 |
| chrX | 22724 | 0.01% | 91 |
| chrY | 160 | <0.01% | 1 |
| 3341 contigs with no values (128891494 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 39272 | 160 | 2680 | 304.47 | 253 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF008LHE.bed.gz | 701.23 KB | 95908e9ec8c79da6bd13d285122039e1 |
| ENCFF008LHE.tabix.bed.gz | 369.4 KB | 4a94d40da09710258f47405931ebe77f |
| ENCFF008LHE.tabix.bed.gz.tbi | 145.87 KB | 105d00acfa154b5a6a0227be57ddd595 |
| genomic_resource.yaml | 2.49 KB | 8a3c646ceca1a0ee25874f4527490d47 |
| statistics/ |