Histone_ChIP-seq_ENCSR000ANF
Histone_ChIP-seq ENCSR000ANF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27ac"]
×
| Id: | Histone_ChIP-seq/ENCSR000ANF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANF [biosamplesummary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN271MPX|/analyses/ENCAN271MPX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN271MPX|/analyses/ENCAN271MPX/} has in progress subobject document {d2cad60a-f469-4f49-92a2-c75012d11ca7|/documents/d2cad60a-f469-4f49-92a2-c75012d11ca7/} audit_not_compliant: Processed alignments file {ENCFF577JPO|/files/ENCFF577JPO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8057667 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 10266559 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF475OCK|/files/ENCFF475OCK/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.31. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANF | float |
Histone_ChIP-seq_ENCSR000ANF |
Histone_ChIP-seq ENCSR000ANF [biosample_summary="Homo sapiens skeletal muscle myoblast male adult (22 years)" and target="H3K27ac"]
|
|
[1.84, 99.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF019RMZ.bed.gz | 1.62 MB | 3cfeebf056397ba0bb316fd14ab9c278 |
| ENCFF019RMZ.bed.gz.dvc | 101.0 B | f8ae40ddd8e7f6127f7e329b440e0d0a |
| ENCFF019RMZ.tabix.bed.gz | 734.59 KB | 975f4f6c854e6758146e775405ed4211 |
| ENCFF019RMZ.tabix.bed.gz.dvc | 106.0 B | df1de2798007147dfb4318e3c5adc206 |
| ENCFF019RMZ.tabix.bed.gz.tbi | 248.2 KB | e9aef5df05f538acebc1b6df74fb3cee |
| ENCFF019RMZ.tabix.bed.gz.tbi.dvc | 110.0 B | 300f45b9fd44fe2d379f5dc7766a4e33 |
| genomic_resource.yaml | 3.97 KB | 8520002b668f62e7263fc9dea6df6e3f |
| genomic_resource_original.yaml | 3.83 KB | f51ca8f282342477b8aa9a3136bcb8d8 |
| statistics/ |