Histone_ChIP-seq_ENCSR000ANB
Histone_ChIP-seq ENCSR000ANB [biosample_summary="Homo sapiens H1" and target="H3K36me3"]
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| Id: | Histone_ChIP-seq/ENCSR000ANB |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANB [biosamplesummary="Homo sapiens H1" and target="H3K36me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN652GDW|/analyses/ENCAN652GDW/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF097LJG|/files/ENCFF097LJG/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 11157638 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF642ZPO|/files/ENCFF642ZPO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline has 11094785 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF642ZPO|/files/ENCFF642ZPO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF642ZPO|/files/ENCFF642ZPO/} processed by ChIP-seq ENCODE4 v1.8.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.55. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANB | float |
Histone_ChIP-seq_ENCSR000ANB |
Histone_ChIP-seq ENCSR000ANB [biosample_summary="Homo sapiens H1" and target="H3K36me3"]
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[2.17, 18.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF504KOV.bed.gz | 1.44 MB | 9d5c70f06a9b493863fc2f386eb08d27 |
| ENCFF504KOV.bed.gz.dvc | 101.0 B | 64cedacbd81757ab8255d08d70c6b37d |
| ENCFF504KOV.tabix.bed.gz | 708.25 KB | 33a7404a0f3bd8388b8f29878638e879 |
| ENCFF504KOV.tabix.bed.gz.dvc | 106.0 B | f40ba83fcedf9c76d30148eaa750cad5 |
| ENCFF504KOV.tabix.bed.gz.tbi | 138.83 KB | 31376d8d6731866c90cece235111237f |
| ENCFF504KOV.tabix.bed.gz.tbi.dvc | 110.0 B | ee4cf909d64db93d1de1f658d029e15d |
| genomic_resource.yaml | 3.7 KB | 5bf050ba7572acc0e49382c54a13c5e1 |
| genomic_resource_original.yaml | 3.59 KB | 61250a2e2e7af70e9d0523b0a57a50f8 |
| statistics/ |