Resource
| Id | Histone_ChIP-seq/ENCSR000AMY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMY [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: replicated peaks audit_error: Processed alignments file {ENCFF866OZT|/files/ENCFF866OZT/} processed by ChIP-seq ENCODE3 hg19 pipeline has 2704077 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN008JZG|/analyses/ENCAN008JZG/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF484YTX|/files/ENCFF484YTX/} processed by ChIP-seq ENCODE3 hg19 pipeline has 5980287 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMY | float |
Histone_ChIP-seq_ENCSR000AMY |
Histone_ChIP-seq ENCSR000AMY [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H4K20me1"]
|
 |
[2.02, 12.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3871840 | 0.12% | 18278 |
| chr1 | 356683 | 0.14% | 1642 |
| chr2 | 320382 | 0.13% | 1488 |
| chr3 | 246464 | 0.12% | 1180 |
| chr4 | 182963 | 0.10% | 905 |
| chr5 | 234513 | 0.13% | 1077 |
| chr6 | 178284 | 0.10% | 898 |
| chr7 | 179371 | 0.11% | 861 |
| chr8 | 175588 | 0.12% | 836 |
| chr9 | 152430 | 0.11% | 726 |
| chr10 | 179710 | 0.13% | 865 |
| chr11 | 199028 | 0.15% | 925 |
| chr12 | 178917 | 0.13% | 830 |
| chr13 | 87962 | 0.08% | 431 |
| chr14 | 125166 | 0.12% | 589 |
| chr15 | 108353 | 0.11% | 528 |
| chr16 | 133219 | 0.15% | 615 |
| chr17 | 178531 | 0.21% | 808 |
| chr18 | 80241 | 0.10% | 399 |
| chr19 | 98163 | 0.17% | 437 |
| chr20 | 102014 | 0.16% | 477 |
| chr21 | 41817 | 0.09% | 204 |
| chr22 | 75240 | 0.15% | 345 |
| chrX | 256801 | 0.16% | 1212 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 18278 | 130 | 1801 | 211.83 | 188 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF816HLJ.bed.gz | 297.42 KB | fdcf8ee96892bb57f4cd7950d6e68dd5 |
| ENCFF816HLJ.tabix.bed.gz | 161.16 KB | a67a883404ed296c4410a66316233a73 |
| ENCFF816HLJ.tabix.bed.gz.tbi | 125.23 KB | ddb1101e5ac265aa1f04c79fdaaa612d |
| genomic_resource.yaml | 2.59 KB | b9acfac7a9c35423d667b3630ae5d965 |
| statistics/ |