Histone_ChIP-seq_ENCSR000AMX
Histone_ChIP-seq ENCSR000AMX [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K9ac"]
×
| Id: | Histone_ChIP-seq/ENCSR000AMX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AMX [biosamplesummary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (11 years) male adult (45 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN671XSS|/analyses/ENCAN671XSS/} has in progress subobject document {eed75a14-d170-40b2-8452-2b205cd75b38|/documents/eed75a14-d170-40b2-8452-2b205cd75b38/} audit_internal_action: Released analysis {ENCAN671XSS|/analyses/ENCAN671XSS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF893NLT|/files/ENCFF893NLT/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 5656242 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF928PXO|/files/ENCFF928PXO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8641616 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF928PXO|/files/ENCFF928PXO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF928PXO|/files/ENCFF928PXO/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.62. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMX | float |
Histone_ChIP-seq_ENCSR000AMX |
Histone_ChIP-seq ENCSR000AMX [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K9ac"]
|
|
[2.06, 111] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF635CCP.bed.gz | 764.81 KB | cf603aa9e643e394116c8c8be7844c1d |
| ENCFF635CCP.bed.gz.dvc | 100.0 B | a43a13173f61007c29d81573bbac8560 |
| ENCFF635CCP.tabix.bed.gz | 356.51 KB | 8e40ec0426e1a9383827bc0075457b7f |
| ENCFF635CCP.tabix.bed.gz.dvc | 106.0 B | 01d5f50c984ee0d5e1a6b564f378867c |
| ENCFF635CCP.tabix.bed.gz.tbi | 149.38 KB | e18916d5cd32011516de0885b0c4cc1a |
| ENCFF635CCP.tabix.bed.gz.tbi.dvc | 110.0 B | 398f6a7066cb5e8a05e1c9bbf6c224ae |
| genomic_resource.yaml | 4.09 KB | 5ea36b60cbee31ed39be2451a2e4ad5d |
| genomic_resource_original.yaml | 3.93 KB | c373a1138901411552cd8f6a9fa82388 |
| statistics/ |