Resource
| Id | Histone_ChIP-seq/ENCSR000AMV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMV [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: replicated peaks audit_error: Processed alignments file {ENCFF227EHJ|/files/ENCFF227EHJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3169809 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN746THU|/analyses/ENCAN746THU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF376UFR|/files/ENCFF376UFR/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7784126 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMV | float |
Histone_ChIP-seq_ENCSR000AMV |
Histone_ChIP-seq ENCSR000AMV [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me2"]
|
 |
[1.84, 32.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 59625227 | 1.85% | 90358 |
| chr1 | 5756062 | 2.31% | 8498 |
| chr2 | 4569972 | 1.89% | 7164 |
| chr3 | 3777976 | 1.91% | 5761 |
| chr4 | 2773227 | 1.46% | 4315 |
| chr5 | 3229421 | 1.78% | 4963 |
| chr6 | 3708155 | 2.17% | 5496 |
| chr7 | 2846044 | 1.79% | 4433 |
| chr8 | 2549602 | 1.76% | 4027 |
| chr9 | 2603323 | 1.88% | 3963 |
| chr10 | 2805486 | 2.10% | 4323 |
| chr11 | 3194828 | 2.37% | 4652 |
| chr12 | 3190669 | 2.39% | 4655 |
| chr13 | 1420062 | 1.24% | 2255 |
| chr14 | 1861956 | 1.74% | 2800 |
| chr15 | 2029394 | 1.99% | 3078 |
| chr16 | 2034929 | 2.25% | 2976 |
| chr17 | 2996647 | 3.60% | 4285 |
| chr18 | 1160113 | 1.44% | 1847 |
| chr19 | 2552315 | 4.35% | 3557 |
| chr20 | 1423244 | 2.21% | 2191 |
| chr21 | 636453 | 1.36% | 995 |
| chr22 | 1163898 | 2.29% | 1703 |
| chrX | 1339156 | 0.86% | 2412 |
| chrY | 2295 | <0.01% | 9 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 90358 | 170 | 12820 | 659.88 | 460 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF862CMS.bed.gz | 1.83 MB | 2a4621b4775e155fa27fd57154eaf8b1 |
| ENCFF862CMS.tabix.bed.gz | 909.6 KB | 58ebb932a03fd9abc7fd6d290e978aab |
| ENCFF862CMS.tabix.bed.gz.tbi | 301.69 KB | 9ea8fda1aa45e53be9d88945d052174d |
| genomic_resource.yaml | 2.59 KB | 2d24b5ec83903a73f62bbfdb6b9a5fc3 |
| statistics/ |