Resource
| Id | Histone_ChIP-seq/ENCSR000AMU |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMU [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (45 years) female child (11 years) output_type: pseudoreplicated peaks audit_error: Processed alignments file {ENCFF088FFQ|/files/ENCFF088FFQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 4430164 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN573OCO|/analyses/ENCAN573OCO/} has in progress subobject document {e25e2309-1110-4f34-b09e-2ee6fea83131|/documents/e25e2309-1110-4f34-b09e-2ee6fea83131/} audit_internal_action: Released analysis {ENCAN573OCO|/analyses/ENCAN573OCO/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF505WNW|/files/ENCFF505WNW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13259702 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMU | float |
Histone_ChIP-seq_ENCSR000AMU |
Histone_ChIP-seq ENCSR000AMU [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K4me1"]
|
 |
[1.94, 16.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41861433 | 1.30% | 102382 |
| chr1 | 4225654 | 1.70% | 9949 |
| chr2 | 3687683 | 1.52% | 9246 |
| chr3 | 2721760 | 1.37% | 6813 |
| chr4 | 1588217 | 0.83% | 4370 |
| chr5 | 2386995 | 1.31% | 5838 |
| chr6 | 2241242 | 1.31% | 5828 |
| chr7 | 1878461 | 1.18% | 4753 |
| chr8 | 2025359 | 1.40% | 5110 |
| chr9 | 1978559 | 1.43% | 4779 |
| chr10 | 2213119 | 1.65% | 5295 |
| chr11 | 2491044 | 1.84% | 5770 |
| chr12 | 2064262 | 1.55% | 5103 |
| chr13 | 938663 | 0.82% | 2445 |
| chr14 | 1284160 | 1.20% | 3113 |
| chr15 | 1658157 | 1.63% | 3886 |
| chr16 | 1482920 | 1.64% | 3421 |
| chr17 | 2159661 | 2.59% | 4825 |
| chr18 | 700704 | 0.87% | 1908 |
| chr19 | 1296776 | 2.21% | 3005 |
| chr20 | 1117220 | 1.73% | 2664 |
| chr21 | 432798 | 0.93% | 1087 |
| chr22 | 952512 | 1.87% | 2121 |
| chrX | 332479 | 0.21% | 1042 |
| chrY | 3028 | 0.01% | 11 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102382 | 155 | 4513 | 408.87 | 322 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF928WDI.bed.gz | 1.87 MB | 191e85afc7bfaf4fdb3f396498dc7328 |
| ENCFF928WDI.tabix.bed.gz | 987.66 KB | 559c3551bd4562ea86120a1a3a47d913 |
| ENCFF928WDI.tabix.bed.gz.tbi | 282.58 KB | 97fd4d1d1c82118a482c61e10c5b5f45 |
| genomic_resource.yaml | 2.82 KB | 77f3eb08b33483ce1e32716d72909580 |
| statistics/ |