| Id: | Histone_ChIP-seq/ENCSR000AMS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AMS [biosamplesummary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K27me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female child (11 years) male adult (45 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN563ZZP|/analyses/ENCAN563ZZP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN563ZZP|/analyses/ENCAN563ZZP/} has in progress subobject document {a8d7b97d-2770-4fad-bf53-3fa8065b4cd2|/documents/a8d7b97d-2770-4fad-bf53-3fa8065b4cd2/} audit_not_compliant: Processed alignments file {ENCFF316JBQ|/files/ENCFF316JBQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 6697413 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF536KWZ|/files/ENCFF536KWZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7893229 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF316JBQ|/files/ENCFF316JBQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.90. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF316JBQ|/files/ENCFF316JBQ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.76. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMS | float |
Histone_ChIP-seq_ENCSR000AMS |
Histone_ChIP-seq ENCSR000AMS [biosample_summary="Homo sapiens fibroblast of lung female child (11 years) and male adult (45 years)" and target="H3K27me3"]
|
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[1.93, 17.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF718BNY.bed.gz | 758.2 KB | ab18fa87dcc6beea699777d55c84854b |
| ENCFF718BNY.bed.gz.dvc | 100.0 B | 597e3de3376a2371c0d193dc636ce3a9 |
| ENCFF718BNY.tabix.bed.gz | 408.21 KB | 47c32cf8af11b59178a1cab31a3ad44e |
| ENCFF718BNY.tabix.bed.gz.dvc | 106.0 B | 9a4c3c64e754d6e2b91a5f467c70772c |
| ENCFF718BNY.tabix.bed.gz.tbi | 135.47 KB | 8a2902e93f454e47ef36714965954fc9 |
| ENCFF718BNY.tabix.bed.gz.tbi.dvc | 110.0 B | cb9b689955f1a12c70286de964270e0a |
| genomic_resource.yaml | 4.1 KB | aa79d57d1dffdd9447d8f13aa97c6c89 |
| genomic_resource_original.yaml | 3.94 KB | 29b639bb6c25aa1de1b6f8bd953a8416 |
| statistics/ |