Resource

Id Histone_ChIP-seq/ENCSR000AMPcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AMP [biosample_summary="Homo sapiens HepG2" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR000AMP
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001187/
  • biosample_summary: Homo sapiens HepG2
  • date_created: 2013-11-07T22:16:24.397298+00:00
  • date_released: 2011-02-10
  • doi: 10.17989/ENCSR000AMP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: As of February 9th, 2017, the control has been changed to ENCSR055XHN, requiring new peaks and signal files.
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AMP float

Histone_ChIP-seq_ENCSR000AMP
Histone_ChIP-seq ENCSR000AMP [biosample_summary="Homo sapiens HepG2" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AMP [2.3, 83]
n
57,767,010
mean
25.9
sd
16.1

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 577670101.80% 46100
chr1 5759336 2.31% 4548
chr1_KI270713v1_random 508 1.25% 2
chr2 4320052 1.78% 3450
chr3 3157703 1.59% 2514
chr4 2054368 1.08% 1624
chr5 2564579 1.41% 2030
chr6 3344415 1.96% 2539
chr7 2682262 1.68% 2220
chr8 2065979 1.42% 1684
chr9 2507365 1.81% 2043
chr10 2462982 1.84% 1981
chr11 2917073 2.16% 2262
chr12 2815068 2.11% 2174
chr13 1104738 0.97% 918
chr14 2037366 1.90% 1587
chr14_GL000194v1_random 656 0.34% 2
chr15 1796239 1.76% 1443
chr16 2748055 3.04% 2220
chr17 3681234 4.42% 2880
chr17_GL000205v2_random 2887 1.56% 2
chr18 968669 1.21% 823
chr19 3348183 5.71% 2700
chr20 1862422 2.89% 1492
chr21 630903 1.35% 537
chr22 1497611 2.95% 1263
chrUn_GL000195v1 1233 0.67% 3
chrUn_GL000219v1 5085 2.84% 5
chrUn_GL000220v1 316 0.20% 1
chrUn_KI270438v1 189 0.17% 1
chrUn_KI270467v1 1125 28.70% 2
chrX 1381096 0.89% 1114
chrY 47313 0.08% 36
3334 contigs with no values (128018959 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46100 175 13176 1253.08 844
global segment-length histogram

Files

Filename Size md5
ENCFF497CNS.bed.gz 1.18 MB 164814c8dafefffb6d6588e82cfe68a4
ENCFF497CNS.tabix.bed.gz 519.91 KB b597756f3d2df83aefeda6232edb8e0f
ENCFF497CNS.tabix.bed.gz.tbi 199.44 KB fc354c6b268b61743955e1d0a09b63a2
genomic_resource.yaml 2.48 KB a542f44eb02c51f2ce176dd0dcc6ae75
statistics/