Resource
| Id | Histone_ChIP-seq/ENCSR000AMM |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMM [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN601KTY|/analyses/ENCAN601KTY/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF744MRF|/files/ENCFF744MRF/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8989881 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF120SIU|/files/ENCFF120SIU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 11657189 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMM | float |
Histone_ChIP-seq_ENCSR000AMM |
Histone_ChIP-seq ENCSR000AMM [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H4K20me1"]
|
 |
[1.92, 14.3] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 4138247 | 0.13% | 13233 |
| chr1 | 411716 | 0.17% | 1256 |
| chr2 | 337154 | 0.14% | 1085 |
| chr3 | 319074 | 0.16% | 976 |
| chr4 | 172301 | 0.09% | 587 |
| chr5 | 231645 | 0.13% | 730 |
| chr6 | 175124 | 0.10% | 620 |
| chr7 | 173401 | 0.11% | 597 |
| chr8 | 187588 | 0.13% | 583 |
| chr9 | 173791 | 0.13% | 531 |
| chr10 | 139125 | 0.10% | 491 |
| chr11 | 187210 | 0.14% | 617 |
| chr12 | 205748 | 0.15% | 664 |
| chr13 | 79738 | 0.07% | 286 |
| chr14 | 143450 | 0.13% | 440 |
| chr15 | 103574 | 0.10% | 345 |
| chr16 | 172960 | 0.19% | 520 |
| chr17 | 259250 | 0.31% | 774 |
| chr18 | 65979 | 0.08% | 237 |
| chr19 | 176666 | 0.30% | 478 |
| chr20 | 140030 | 0.22% | 414 |
| chr21 | 52115 | 0.11% | 168 |
| chr22 | 94019 | 0.19% | 299 |
| chrUn_KI270438v1 | 1204 | 1.07% | 4 |
| chrUn_KI270467v1 | 956 | 24.39% | 2 |
| chrX | 134429 | 0.09% | 529 |
| 3341 contigs with no values (186188075 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 13233 | 135 | 4542 | 312.72 | 249 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF657XGG.bed.gz | 260.2 KB | 766b1f57f7c435f8259df0e40812992f |
| ENCFF657XGG.tabix.bed.gz | 131.91 KB | 157a443f95748e8b08cc66dc018ffaaa |
| ENCFF657XGG.tabix.bed.gz.tbi | 71.17 KB | a523aac1dc077903002b7c6c36ce268e |
| genomic_resource.yaml | 2.49 KB | a0c7d2c1fc3f90b11238952f52f6ef09 |
| statistics/ |