Histone_ChIP-seq_ENCSR000AMJ
Histone_ChIP-seq ENCSR000AMJ [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me1"]
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| Id: | Histone_ChIP-seq/ENCSR000AMJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AMJ [biosamplesummary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN549YNX|/analyses/ENCAN549YNX/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF239XXU|/files/ENCFF239XXU/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 12279025 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF062LKX|/files/ENCFF062LKX/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 14512004 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMJ | float |
Histone_ChIP-seq_ENCSR000AMJ |
Histone_ChIP-seq ENCSR000AMJ [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me1"]
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[1.75, 27.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF810PYC.bed.gz | 3.32 MB | 639a750660c5ba46b99f7128270263b9 |
| ENCFF810PYC.bed.gz.dvc | 101.0 B | 75ec4d605aa7b270f2ae1072ebf3e187 |
| ENCFF810PYC.tabix.bed.gz | 1.48 MB | a37a682477df462825a0943fd92ebeab |
| ENCFF810PYC.tabix.bed.gz.dvc | 107.0 B | 6560502f029b86354ffedeb57b746494 |
| ENCFF810PYC.tabix.bed.gz.tbi | 379.91 KB | b5a6272ba4a8d3668ff4517b2b3a3a2d |
| ENCFF810PYC.tabix.bed.gz.tbi.dvc | 110.0 B | 2970edb0f01dd61b1a1de4c3f718636b |
| genomic_resource.yaml | 2.49 KB | 3d4d40c0250bcc1b5e5ead0fbf87d3e8 |
| genomic_resource_original.yaml | 2.34 KB | d520c7944d3553cc44dd94daa9813660 |
| statistics/ |