Resource
| Id | Histone_ChIP-seq/ENCSR000AMB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AMB [biosample_summary="Homo sapiens HepG2" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: replicated peaks audit_error: Processed alignments file {ENCFF508EQJ|/files/ENCFF508EQJ/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4421471 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF830FLY|/files/ENCFF830FLY/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 4607817 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN142ACM|/analyses/ENCAN142ACM/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AMB | float |
Histone_ChIP-seq_ENCSR000AMB |
Histone_ChIP-seq ENCSR000AMB [biosample_summary="Homo sapiens HepG2" and target="H3K36me3"]
|
 |
[2.27, 17.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 88128578 | 2.74% | 157130 |
| chr1 | 7858807 | 3.16% | 14717 |
| chr1_KI270711v1_random | 353 | 0.84% | 1 |
| chr2 | 8641068 | 3.57% | 13251 |
| chr3 | 5580420 | 2.81% | 10722 |
| chr4 | 3071580 | 1.61% | 6243 |
| chr5 | 3931038 | 2.17% | 7706 |
| chr6 | 4816862 | 2.82% | 7949 |
| chr7 | 4122034 | 2.59% | 8032 |
| chr8 | 3147910 | 2.17% | 6171 |
| chr9 | 3905084 | 2.82% | 7144 |
| chr10 | 3843549 | 2.87% | 7360 |
| chr11 | 4201755 | 3.11% | 7722 |
| chr12 | 4473401 | 3.36% | 8476 |
| chr13 | 1936179 | 1.69% | 3932 |
| chr14 | 3063151 | 2.86% | 5293 |
| chr15 | 2811460 | 2.76% | 5510 |
| chr16 | 4596494 | 5.09% | 6609 |
| chr17 | 5390281 | 6.47% | 8648 |
| chr17_GL000205v2_random | 185 | 0.10% | 1 |
| chr18 | 1457134 | 1.81% | 3006 |
| chr19 | 3282147 | 5.60% | 5891 |
| chr20 | 3780290 | 5.87% | 4798 |
| chr21 | 930074 | 1.99% | 1710 |
| chr22 | 2254782 | 4.44% | 3747 |
| chrUn_GL000195v1 | 316 | 0.17% | 1 |
| chrUn_KI270438v1 | 1529 | 1.36% | 5 |
| chrX | 1000024 | 0.64% | 2407 |
| chrY | 30671 | 0.05% | 78 |
| 3338 contigs with no values (128553883 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 157130 | 185 | 10089 | 560.86 | 429 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF962OGI.bed.gz | 3.06 MB | aa46ad8115ac132ddea4d3c63ca3677a |
| ENCFF962OGI.tabix.bed.gz | 1.49 MB | 29b3472f90fe7688b488e077a2c21b22 |
| ENCFF962OGI.tabix.bed.gz.tbi | 183.2 KB | d9ac12a2cef3ba4bd7827a17a5a8c03a |
| genomic_resource.yaml | 2.46 KB | b56e479215c33018a4b3580143c6d5cd |
| statistics/ |