Resource
| Id | Histone_ChIP-seq/ENCSR000ALY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALY [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K36me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN038CWW|/analyses/ENCAN038CWW/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF083BCW|/files/ENCFF083BCW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 8462445 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF244KWR|/files/ENCFF244KWR/} processed by ChIP-seq ENCODE3 GRCh38 pipeline has 6933570 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K36me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALY | float |
Histone_ChIP-seq_ENCSR000ALY |
Histone_ChIP-seq ENCSR000ALY [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K36me3"]
|
 |
[2.12, 12.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51422241 | 1.60% | 139664 |
| chr1 | 5332967 | 2.14% | 14107 |
| chr1_KI270711v1_random | 220 | 0.52% | 1 |
| chr2 | 4469498 | 1.85% | 11914 |
| chr3 | 3552764 | 1.79% | 9611 |
| chr4 | 2397928 | 1.26% | 6807 |
| chr5 | 2983617 | 1.64% | 8046 |
| chr6 | 2508632 | 1.47% | 7046 |
| chr7 | 2307282 | 1.45% | 6343 |
| chr8 | 2014247 | 1.39% | 5626 |
| chr9 | 2003899 | 1.45% | 5526 |
| chr10 | 2465883 | 1.84% | 6627 |
| chr11 | 2630633 | 1.95% | 7001 |
| chr12 | 3072736 | 2.31% | 8204 |
| chr13 | 1129406 | 0.99% | 3257 |
| chr14 | 1812926 | 1.69% | 5000 |
| chr15 | 1859141 | 1.82% | 5061 |
| chr16 | 1892302 | 2.09% | 5111 |
| chr17 | 2641980 | 3.17% | 7013 |
| chr18 | 1093023 | 1.36% | 2895 |
| chr19 | 1660121 | 2.83% | 4698 |
| chr20 | 1422203 | 2.21% | 3662 |
| chr21 | 630027 | 1.35% | 1652 |
| chr22 | 1027167 | 2.02% | 2737 |
| chrUn_KI270438v1 | 1127 | 1.00% | 4 |
| chrUn_KI270467v1 | 296 | 7.55% | 1 |
| chrX | 512216 | 0.33% | 1714 |
| 3340 contigs with no values (186145865 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 139664 | 125 | 4939 | 368.19 | 299 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF907LDT.bed.gz | 2.58 MB | 5e336ed43b1002e75c0d945892eb1f47 |
| ENCFF907LDT.tabix.bed.gz | 1.29 MB | 878bb6ff7e76f30124ecdce0f3d41ff4 |
| ENCFF907LDT.tabix.bed.gz.tbi | 196.83 KB | 3275e305cc7ed0c1bb79862d1292de42 |
| genomic_resource.yaml | 2.49 KB | b50adbb599e99a27ee1e72c09e4342c4 |
| statistics/ |