Histone_ChIP-seq_ENCSR000ALW
Histone_ChIP-seq ENCSR000ALW [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K27ac"]
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| Id: | Histone_ChIP-seq/ENCSR000ALW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ALW [biosamplesummary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K27ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN532TFF|/analyses/ENCAN532TFF/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF807VEH|/files/ENCFF807VEH/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7439983 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF674SDM|/files/ENCFF674SDM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9853373 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF807VEH|/files/ENCFF807VEH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.80. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF807VEH|/files/ENCFF807VEH/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 4.88. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALW | float |
Histone_ChIP-seq_ENCSR000ALW |
Histone_ChIP-seq ENCSR000ALW [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K27ac"]
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[1.77, 90.3] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF360PVA.bed.gz | 1.62 MB | d492ced5c246be0a9b8bda3af592b867 |
| ENCFF360PVA.bed.gz.dvc | 101.0 B | 032d784890808a94b6d55d95a6a97f1d |
| ENCFF360PVA.tabix.bed.gz | 722.07 KB | edc479ae19e72e33df06ef7fbbb6325e |
| ENCFF360PVA.tabix.bed.gz.dvc | 106.0 B | d8464926e04c476be2f88a367286a23e |
| ENCFF360PVA.tabix.bed.gz.tbi | 236.71 KB | 58eec65e7a8b6972f0fd0bab8e55f3b6 |
| ENCFF360PVA.tabix.bed.gz.tbi.dvc | 110.0 B | c00185aa9696988eae34fbd4ab660ac9 |
| genomic_resource.yaml | 3.73 KB | f39244bd5f17d06e841f03a35c6ae42e |
| genomic_resource_original.yaml | 3.59 KB | caf38b577e5dd4701c0fac0eb09c1969 |
| statistics/ |