Resource
| Id | Histone_ChIP-seq/ENCSR000ALR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALR [biosample_summary="Homo sapiens keratinocyte female" and target="H4K20me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF978USL|/files/ENCFF978USL/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3277633 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN498IDN|/analyses/ENCAN498IDN/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF665MHK|/files/ENCFF665MHK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 5922200 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF609KHG|/files/ENCFF609KHG/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6044680 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H4K20me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALR | float |
Histone_ChIP-seq_ENCSR000ALR |
Histone_ChIP-seq ENCSR000ALR [biosample_summary="Homo sapiens keratinocyte female" and target="H4K20me1"]
|
 |
[2.16, 10.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 3994084 | 0.12% | 12132 |
| chr1 | 422301 | 0.17% | 1247 |
| chr2 | 237048 | 0.10% | 799 |
| chr3 | 262336 | 0.13% | 808 |
| chr4 | 107337 | 0.06% | 353 |
| chr5 | 171685 | 0.09% | 531 |
| chr6 | 160070 | 0.09% | 503 |
| chr7 | 162903 | 0.10% | 525 |
| chr8 | 149525 | 0.10% | 468 |
| chr9 | 171417 | 0.12% | 509 |
| chr10 | 161727 | 0.12% | 513 |
| chr11 | 194701 | 0.14% | 581 |
| chr12 | 173403 | 0.13% | 532 |
| chr13 | 57962 | 0.05% | 190 |
| chr14 | 140325 | 0.13% | 428 |
| chr15 | 104976 | 0.10% | 322 |
| chr16 | 206180 | 0.23% | 607 |
| chr17 | 324005 | 0.39% | 933 |
| chr18 | 52918 | 0.07% | 168 |
| chr19 | 254040 | 0.43% | 707 |
| chr20 | 200768 | 0.31% | 600 |
| chr21 | 72370 | 0.15% | 214 |
| chr22 | 175526 | 0.35% | 491 |
| chrX | 30561 | 0.02% | 103 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 12132 | 190 | 2748 | 329.22 | 266 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF431UTV.bed.gz | 204.87 KB | fdb41a4a97d32306a3dcd3f6dc897eee |
| ENCFF431UTV.tabix.bed.gz | 114.93 KB | 5c0fff0cb7677b7c0bbce38361649bca |
| ENCFF431UTV.tabix.bed.gz.tbi | 51.56 KB | 957e33b173a8899792b28f46db22e6f3 |
| genomic_resource.yaml | 2.85 KB | c043f6d4803e6ffbd1ee3bb35a6223b9 |
| statistics/ |