Resource
| Id | Histone_ChIP-seq/ENCSR000ALP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALP [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF039LPD|/files/ENCFF039LPD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3855585 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN553HVQ|/analyses/ENCAN553HVQ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF284YVY|/files/ENCFF284YVY/} processed by ChIP-seq ENCODE3 hg19 pipeline has 5637777 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF940EVD|/files/ENCFF940EVD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 6268163 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALP | float |
Histone_ChIP-seq_ENCSR000ALP |
Histone_ChIP-seq ENCSR000ALP [biosample_summary="Homo sapiens keratinocyte female" and target="H3K9ac"]
|
 |
[2.06, 106] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 36556176 | 1.14% | 48802 |
| chr1 | 3755736 | 1.51% | 4948 |
| chr2 | 2565360 | 1.06% | 3541 |
| chr3 | 2164474 | 1.09% | 2866 |
| chr4 | 1444279 | 0.76% | 1965 |
| chr5 | 1683922 | 0.93% | 2195 |
| chr6 | 2227574 | 1.30% | 2908 |
| chr7 | 1674130 | 1.05% | 2252 |
| chr8 | 1370692 | 0.94% | 1914 |
| chr9 | 1483471 | 1.07% | 2033 |
| chr10 | 1638751 | 1.22% | 2170 |
| chr11 | 1924991 | 1.43% | 2438 |
| chr12 | 2080304 | 1.56% | 2672 |
| chr13 | 721455 | 0.63% | 993 |
| chr14 | 1223824 | 1.14% | 1586 |
| chr15 | 1232630 | 1.21% | 1664 |
| chr16 | 1409597 | 1.56% | 1898 |
| chr17 | 2114267 | 2.54% | 2799 |
| chr18 | 720565 | 0.90% | 1009 |
| chr19 | 1951585 | 3.33% | 2536 |
| chr20 | 998126 | 1.55% | 1355 |
| chr21 | 484412 | 1.04% | 678 |
| chr22 | 866020 | 1.70% | 1173 |
| chrX | 819498 | 0.53% | 1208 |
| chrY | 513 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 48802 | 170 | 16573 | 749.07 | 458 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF609GAD.bed.gz | 1.04 MB | 7943a8a55580bd2313b7c087c507bef3 |
| ENCFF609GAD.tabix.bed.gz | 509.75 KB | f0a1c1a01b473d598ed7675919b1206e |
| ENCFF609GAD.tabix.bed.gz.tbi | 190.9 KB | 6f0c9dce1837e9c1c6b608c42833e8c1 |
| genomic_resource.yaml | 2.84 KB | 9c118286b0c4fc7061e64f7111c58686 |
| statistics/ |