type: position_score
table:
  filename: ENCFF609GAD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR000ALP
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000ALP [TISSUE: Homo sapiens keratinocyte female, TARGET:
    H3K9ac]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female


    **output\_type**: replicated peaks


    **audit\_error**: Processed alignments file {ENCFF039LPD|/files/ENCFF039LPD/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 3855585 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_internal\_action**: Archived analysis {ENCAN553HVQ|/analyses/ENCAN553HVQ/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF284YVY|/files/ENCFF284YVY/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 5637777 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_not\_compliant**: Processed alignments file {ENCFF940EVD|/files/ENCFF940EVD/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 6268163 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000ALP
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female
    biosample_summary: Homo sapiens keratinocyte female
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000312/
    perturbed: false
    doi: 10.17989/ENCSR000ALP
    date_created: '2013-11-07T22:16:24.060916+00:00'
    date_released: '2011-02-10'
    submitter_comment: ''
    target: H3K9ac
