Resource
| Id | Histone_ChIP-seq/ENCSR000ALO |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALO [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: replicated peaks audit_error: Processed alignments file {ENCFF174BJB|/files/ENCFF174BJB/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4402957 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN096DHR|/analyses/ENCAN096DHR/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF747OGU|/files/ENCFF747OGU/} processed by ChIP-seq ENCODE3 hg19 pipeline has 7118342 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me3-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALO | float |
Histone_ChIP-seq_ENCSR000ALO |
Histone_ChIP-seq ENCSR000ALO [biosample_summary="Homo sapiens keratinocyte female" and target="H3K4me3"]
|
 |
[2.01, 57.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 33807414 | 1.05% | 46115 |
| chr1 | 3443720 | 1.38% | 4569 |
| chr2 | 2394257 | 0.99% | 3342 |
| chr3 | 1988668 | 1.00% | 2576 |
| chr4 | 1454959 | 0.76% | 1910 |
| chr5 | 1599997 | 0.88% | 2068 |
| chr6 | 2148358 | 1.26% | 2828 |
| chr7 | 1576873 | 0.99% | 2245 |
| chr8 | 1267246 | 0.87% | 1734 |
| chr9 | 1383961 | 1.00% | 1912 |
| chr10 | 1475241 | 1.10% | 2033 |
| chr11 | 1795114 | 1.33% | 2413 |
| chr12 | 1853686 | 1.39% | 2414 |
| chr13 | 707816 | 0.62% | 987 |
| chr14 | 1131625 | 1.06% | 1514 |
| chr15 | 1103144 | 1.08% | 1533 |
| chr16 | 1249467 | 1.38% | 1765 |
| chr17 | 1885805 | 2.27% | 2661 |
| chr18 | 643316 | 0.80% | 910 |
| chr19 | 1903652 | 3.25% | 2606 |
| chr20 | 859367 | 1.33% | 1184 |
| chr21 | 359340 | 0.77% | 531 |
| chr22 | 716070 | 1.41% | 1061 |
| chrX | 864829 | 0.55% | 1316 |
| chrY | 903 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 46115 | 155 | 8887 | 733.11 | 436 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF027FJC.bed.gz | 970.14 KB | 7252ee4a99e0f1235801a0c7ee33fc11 |
| ENCFF027FJC.tabix.bed.gz | 473.57 KB | e55d60e0449928c12760762ed9a6d1d5 |
| ENCFF027FJC.tabix.bed.gz.tbi | 192.12 KB | eac91719ed5c9f919a3c1b032d9ba4cb |
| genomic_resource.yaml | 2.36 KB | 1fef14e44ebd33683b2edb411073689d |
| statistics/ |