Resource
| Id | Histone_ChIP-seq/ENCSR000ALN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALN [biosample_summary="Homo sapiens keratinocyte male" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 2, Rep 3 summary: male output_type: replicated peaks audit_error: Processed alignments file {ENCFF497QKF|/files/ENCFF497QKF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3923832 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF048WUM|/files/ENCFF048WUM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4943161 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN109ESE|/analyses/ENCAN109ESE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF978ESV|/files/ENCFF978ESV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9275253 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALN | float |
Histone_ChIP-seq_ENCSR000ALN |
Histone_ChIP-seq ENCSR000ALN [biosample_summary="Homo sapiens keratinocyte male" and target="H3K4me2"]
|
 |
[1.89, 29.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61345506 | 1.91% | 86861 |
| chr1 | 6179677 | 2.48% | 8608 |
| chr2 | 4773938 | 1.97% | 6883 |
| chr3 | 3909777 | 1.97% | 5464 |
| chr4 | 2886831 | 1.52% | 4056 |
| chr5 | 3103369 | 1.71% | 4442 |
| chr6 | 3977535 | 2.33% | 5445 |
| chr7 | 2870690 | 1.80% | 4160 |
| chr8 | 2483736 | 1.71% | 3626 |
| chr9 | 2604994 | 1.88% | 3678 |
| chr10 | 2865456 | 2.14% | 4059 |
| chr11 | 3173470 | 2.35% | 4379 |
| chr12 | 3328229 | 2.50% | 4612 |
| chr13 | 1421265 | 1.24% | 2121 |
| chr14 | 2023539 | 1.89% | 2780 |
| chr15 | 2121801 | 2.08% | 3033 |
| chr16 | 2005669 | 2.22% | 2882 |
| chr17 | 3029773 | 3.64% | 4183 |
| chr18 | 1310506 | 1.63% | 1888 |
| chr19 | 2503536 | 4.27% | 3441 |
| chr20 | 1547564 | 2.40% | 2184 |
| chr21 | 730426 | 1.56% | 1070 |
| chr22 | 1209583 | 2.38% | 1669 |
| chrX | 1284142 | 0.82% | 2198 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 86861 | 170 | 17750 | 706.25 | 513 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF151KPU.bed.gz | 1.74 MB | ce5a599a9df4ddc9715887ad3d559e36 |
| ENCFF151KPU.tabix.bed.gz | 884.95 KB | d4b04faa206c6d92d7d491dfcc0bc2f8 |
| ENCFF151KPU.tabix.bed.gz.tbi | 303.63 KB | 3c9e4b93a2f34f732355ea4bca9e9d85 |
| genomic_resource.yaml | 2.82 KB | 3d4e4ef4512d90721bba2fecbba2e9b7 |
| statistics/ |