Histone_ChIP-seq_ENCSR000ALN
Histone_ChIP-seq ENCSR000ALN [biosample_summary="Homo sapiens keratinocyte male" and target="H3K4me2"]
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| Id: | Histone_ChIP-seq/ENCSR000ALN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ALN [biosamplesummary="Homo sapiens keratinocyte male" and target="H3K4me2"] |
| Description: |
status: released biological_replicates: Rep 2, Rep 3 summary: male output_type: replicated peaks audit_error: Processed alignments file {ENCFF497QKF|/files/ENCFF497QKF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 3923832 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_error: Processed alignments file {ENCFF048WUM|/files/ENCFF048WUM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 4943161 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Archived analysis {ENCAN109ESE|/analyses/ENCAN109ESE/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF978ESV|/files/ENCFF978ESV/} processed by ChIP-seq ENCODE3 hg19 pipeline has 9275253 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALN | float |
Histone_ChIP-seq_ENCSR000ALN |
Histone_ChIP-seq ENCSR000ALN [biosample_summary="Homo sapiens keratinocyte male" and target="H3K4me2"]
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[1.89, 29.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF151KPU.bed.gz | 1.74 MB | ce5a599a9df4ddc9715887ad3d559e36 |
| ENCFF151KPU.bed.gz.dvc | 101.0 B | a0d43ec937a3d2a6d71414c060cb0a48 |
| ENCFF151KPU.tabix.bed.gz | 884.95 KB | d4b04faa206c6d92d7d491dfcc0bc2f8 |
| ENCFF151KPU.tabix.bed.gz.dvc | 106.0 B | af9710dab88dda26636c57fa1b1917cb |
| ENCFF151KPU.tabix.bed.gz.tbi | 303.63 KB | 3c9e4b93a2f34f732355ea4bca9e9d85 |
| ENCFF151KPU.tabix.bed.gz.tbi.dvc | 110.0 B | 5c644d37ca5b30fb87502675b2e21f78 |
| genomic_resource.yaml | 2.82 KB | 3d4e4ef4512d90721bba2fecbba2e9b7 |
| genomic_resource_original.yaml | 2.71 KB | e95db9565441c0fe3e615e936eaf9744 |
| statistics/ |