Resource
| Id | Histone_ChIP-seq/ENCSR000ALK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000ALK [biosample_summary="Homo sapiens keratinocyte female" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN153QHY|/analyses/ENCAN153QHY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN153QHY|/analyses/ENCAN153QHY/} has in progress subobject document {e2c3a5ea-1af9-41d3-a711-756038bcd20f|/documents/e2c3a5ea-1af9-41d3-a711-756038bcd20f/} audit_not_compliant: Processed alignments file {ENCFF770JWP|/files/ENCFF770JWP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 8908087 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF051NTC|/files/ENCFF051NTC/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 7264022 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ALK | float |
Histone_ChIP-seq_ENCSR000ALK |
Histone_ChIP-seq ENCSR000ALK [biosample_summary="Homo sapiens keratinocyte female" and target="H3K27ac"]
|
 |
[1.93, 148] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 71340090 | 2.22% | 67962 |
| chr1 | 7177603 | 2.88% | 6706 |
| chr2 | 5623385 | 2.32% | 5405 |
| chr3 | 4749620 | 2.40% | 4486 |
| chr4 | 3328334 | 1.75% | 3298 |
| chr5 | 3630294 | 2.00% | 3472 |
| chr6 | 4519557 | 2.65% | 4120 |
| chr7 | 3370836 | 2.12% | 3256 |
| chr8 | 3003270 | 2.07% | 2999 |
| chr9 | 2968542 | 2.14% | 2953 |
| chr10 | 3446071 | 2.58% | 3257 |
| chr11 | 3634708 | 2.69% | 3363 |
| chr12 | 3987546 | 2.99% | 3558 |
| chr13 | 1647298 | 1.44% | 1659 |
| chr14 | 2329858 | 2.18% | 2157 |
| chr15 | 2474594 | 2.43% | 2306 |
| chr16 | 2308532 | 2.56% | 2319 |
| chr17 | 3324849 | 3.99% | 3054 |
| chr18 | 1616918 | 2.01% | 1512 |
| chr19 | 2462561 | 4.20% | 2389 |
| chr20 | 1893316 | 2.94% | 1757 |
| chr21 | 934450 | 2.00% | 865 |
| chr22 | 1372984 | 2.70% | 1287 |
| chrX | 1534964 | 0.98% | 1784 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67962 | 193 | 17648 | 1049.71 | 667 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF666UYC.bed.gz | 1.6 MB | f3bcfc05dab4ef5c49508b75b75bc41b |
| ENCFF666UYC.tabix.bed.gz | 732.23 KB | 88320ec50972cf369d739202d16ef993 |
| ENCFF666UYC.tabix.bed.gz.tbi | 240.33 KB | 4350095e02d02364c865235465f1d63c |
| genomic_resource.yaml | 2.61 KB | 990fec9f27ad953683766894e6389cac |
| statistics/ |