Histone_ChIP-seq_ENCSR000AKV
Histone_ChIP-seq ENCSR000AKV [biosample_summary="Homo sapiens K562" and target="H3K9ac"]
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| Id: | Histone_ChIP-seq/ENCSR000AKV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000AKV [biosamplesummary="Homo sapiens K562" and target="H3K9ac"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN231GNS|/analyses/ENCAN231GNS/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN231GNS|/analyses/ENCAN231GNS/} has in progress subobject document {690a9496-862d-44ed-9d8c-9f83c807bdb6|/documents/690a9496-862d-44ed-9d8c-9f83c807bdb6/} audit_not_compliant: Processed alignments file {ENCFF505NMT|/files/ENCFF505NMT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8702063 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF149MXA|/files/ENCFF149MXA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 13361217 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF505NMT|/files/ENCFF505NMT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF505NMT|/files/ENCFF505NMT/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 6.86. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKV | float |
Histone_ChIP-seq_ENCSR000AKV |
Histone_ChIP-seq ENCSR000AKV [biosample_summary="Homo sapiens K562" and target="H3K9ac"]
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[1.81, 98.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF891CHI.bed.gz | 1003.52 KB | 0c4d48de710e88b7049fe53eb9b31dbe |
| ENCFF891CHI.bed.gz.dvc | 101.0 B | e937445dec1533d3b99045d220af7b5e |
| ENCFF891CHI.tabix.bed.gz | 430.99 KB | c8fa28e5c928deb0f481d8b7bebb6869 |
| ENCFF891CHI.tabix.bed.gz.dvc | 106.0 B | 4e5c62b9d8a78b6191e315236510260a |
| ENCFF891CHI.tabix.bed.gz.tbi | 157.48 KB | ce3c2113478037246929860ff460baf7 |
| ENCFF891CHI.tabix.bed.gz.tbi.dvc | 110.0 B | 0e4efb896543d21ca17dcc99ceb10526 |
| genomic_resource.yaml | 4.05 KB | ae0e6e3f001f526b4ac1abbdc8916d3a |
| genomic_resource_original.yaml | 3.95 KB | 78d468e1d4e98ba5641d82791cdeb34e |
| statistics/ |