Resource
| Id | Histone_ChIP-seq/ENCSR000AKT |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKT [biosample_summary="Homo sapiens K562" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN608CZX|/analyses/ENCAN608CZX/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN608CZX|/analyses/ENCAN608CZX/} has in progress subobject document {2ded7c03-12ac-4d25-84e6-92286d54c460|/documents/2ded7c03-12ac-4d25-84e6-92286d54c460/} audit_not_compliant: Processed alignments file {ENCFF446FUS|/files/ENCFF446FUS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9297178 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF583GSH|/files/ENCFF583GSH/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6882054 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKT | float |
Histone_ChIP-seq_ENCSR000AKT |
Histone_ChIP-seq ENCSR000AKT [biosample_summary="Homo sapiens K562" and target="H3K4me2"]
|
 |
[2.13, 97.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64797335 | 2.01% | 64418 |
| chr1 | 6889888 | 2.77% | 6733 |
| chr2 | 4492059 | 1.85% | 4701 |
| chr3 | 3737993 | 1.89% | 3824 |
| chr4 | 2411678 | 1.27% | 2540 |
| chr5 | 2923602 | 1.61% | 2924 |
| chr6 | 4327801 | 2.53% | 4159 |
| chr7 | 3262972 | 2.05% | 3394 |
| chr8 | 2518058 | 1.73% | 2623 |
| chr9 | 2476091 | 1.79% | 2495 |
| chr10 | 2883131 | 2.15% | 2938 |
| chr11 | 3476003 | 2.57% | 3284 |
| chr12 | 3369087 | 2.53% | 3277 |
| chr13 | 1070635 | 0.94% | 1178 |
| chr14 | 1906863 | 1.78% | 1867 |
| chr15 | 2085227 | 2.04% | 2091 |
| chr16 | 2534589 | 2.81% | 2417 |
| chr17 | 3548002 | 4.26% | 3320 |
| chr18 | 1002052 | 1.25% | 1060 |
| chr19 | 3923037 | 6.69% | 3578 |
| chr20 | 1791841 | 2.78% | 1832 |
| chr21 | 746289 | 1.60% | 813 |
| chr22 | 1408690 | 2.77% | 1361 |
| chrX | 2011747 | 1.29% | 2009 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 64418 | 175 | 13297 | 1005.89 | 670 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF749KLQ.bed.gz | 1.58 MB | 55c1093b8d98bef1dc7f788fbb44eb7c |
| ENCFF749KLQ.tabix.bed.gz | 704.6 KB | 392c40c57a3ef07d1073d9be4f1b8db7 |
| ENCFF749KLQ.tabix.bed.gz.tbi | 237.84 KB | 65d736a548f04ca3beb0737e294abee9 |
| genomic_resource.yaml | 2.6 KB | d25179e1c451457b6de2e064b80fa75b |
| statistics/ |