Resource
| Id | Histone_ChIP-seq/ENCSR000AKS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKS [biosample_summary="Homo sapiens K562" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Archived analysis {ENCAN125LXN|/analyses/ENCAN125LXN/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Archived analysis {ENCAN125LXN|/analyses/ENCAN125LXN/} has in progress subobject document {e8b25724-61d5-4995-ae60-3f52f0ef88e1|/documents/e8b25724-61d5-4995-ae60-3f52f0ef88e1/} audit_not_compliant: Processed alignments file {ENCFF352HXD|/files/ENCFF352HXD/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9397237 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF415GHS|/files/ENCFF415GHS/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8138614 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKS | float |
Histone_ChIP-seq_ENCSR000AKS |
Histone_ChIP-seq ENCSR000AKS [biosample_summary="Homo sapiens K562" and target="H3K4me1"]
|
 |
[1.92, 33.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 99697948 | 3.10% | 116407 |
| chr1 | 11687432 | 4.69% | 12746 |
| chr2 | 7459326 | 3.08% | 8898 |
| chr3 | 6494499 | 3.28% | 7600 |
| chr4 | 3399149 | 1.79% | 4341 |
| chr5 | 4636680 | 2.55% | 5344 |
| chr6 | 6797617 | 3.98% | 7546 |
| chr7 | 4897576 | 3.07% | 5807 |
| chr8 | 4105238 | 2.83% | 4808 |
| chr9 | 3891407 | 2.81% | 4540 |
| chr10 | 4703965 | 3.52% | 5386 |
| chr11 | 5669681 | 4.20% | 6425 |
| chr12 | 4987091 | 3.74% | 6104 |
| chr13 | 1447640 | 1.27% | 1911 |
| chr14 | 2774137 | 2.59% | 3278 |
| chr15 | 3393270 | 3.33% | 3961 |
| chr16 | 3546010 | 3.93% | 4178 |
| chr17 | 5142191 | 6.18% | 5881 |
| chr18 | 1608160 | 2.00% | 1895 |
| chr19 | 4048034 | 6.91% | 5199 |
| chr20 | 2934717 | 4.55% | 3299 |
| chr21 | 1130141 | 2.42% | 1333 |
| chr22 | 2243140 | 4.41% | 2611 |
| chrX | 2700847 | 1.73% | 3316 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 116407 | 188 | 15027 | 856.46 | 638 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF759NWD.bed.gz | 2.6 MB | 6e5be1674e0d7f3ddcc52b85dd278913 |
| ENCFF759NWD.tabix.bed.gz | 1.18 MB | 3740ad39d0bbade26b4c365232c54658 |
| ENCFF759NWD.tabix.bed.gz.tbi | 263.22 KB | 51dd04cad8b6a81626d5d745c5112b20 |
| genomic_resource.yaml | 2.6 KB | 2ab93dfe177b9fd51a60c445bbcca67e |
| statistics/ |