Resource
| Id | Histone_ChIP-seq/ENCSR000AKK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKK [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: newborn output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN020OSY|/analyses/ENCAN020OSY/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN020OSY|/analyses/ENCAN020OSY/} has in progress subobject document {42f7c22b-96b0-40bd-a2f2-d07160438266|/documents/42f7c22b-96b0-40bd-a2f2-d07160438266/} audit_not_compliant: Processed alignments file {ENCFF894USA|/files/ENCFF894USA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 9618506 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF071NXV|/files/ENCFF071NXV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8807169 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKK | float |
Histone_ChIP-seq_ENCSR000AKK |
Histone_ChIP-seq ENCSR000AKK [biosample_summary="Homo sapiens endothelial cell of umbilical vein newborn" and target="H3K27me3"]
|
 |
[1.61, 27.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 45031158 | 1.40% | 79921 |
| chr1 | 4026828 | 1.62% | 7121 |
| chr2 | 3796627 | 1.57% | 6757 |
| chr3 | 2570694 | 1.30% | 4927 |
| chr4 | 2257215 | 1.19% | 4015 |
| chr5 | 2828603 | 1.56% | 4860 |
| chr6 | 3134253 | 1.83% | 5523 |
| chr7 | 2345529 | 1.47% | 4091 |
| chr8 | 2375453 | 1.64% | 4399 |
| chr9 | 1955092 | 1.41% | 3399 |
| chr10 | 2549727 | 1.91% | 4484 |
| chr11 | 2446708 | 1.81% | 4486 |
| chr12 | 2089794 | 1.57% | 3740 |
| chr13 | 1449870 | 1.27% | 2622 |
| chr14 | 1727883 | 1.61% | 3011 |
| chr15 | 1807138 | 1.77% | 3090 |
| chr16 | 813588 | 0.90% | 1418 |
| chr17 | 1897097 | 2.28% | 3056 |
| chr18 | 1044608 | 1.30% | 1942 |
| chr19 | 845891 | 1.44% | 1332 |
| chr20 | 1309883 | 2.03% | 2367 |
| chr21 | 664048 | 1.42% | 1215 |
| chr22 | 710092 | 1.40% | 1352 |
| chrX | 374615 | 0.24% | 698 |
| chrY | 9922 | 0.02% | 16 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 79921 | 175 | 23815 | 563.45 | 368 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF977TUS.bed.gz | 1.48 MB | 2b1035636da02c92b3206322c3d5fd77 |
| ENCFF977TUS.tabix.bed.gz | 766.44 KB | ef1101f2781f5ef43e7ccfd60040d0c8 |
| ENCFF977TUS.tabix.bed.gz.tbi | 197.52 KB | f641ff63302f7f874d40ae8f4fa336aa |
| genomic_resource.yaml | 2.99 KB | c640ce3b81347d2261e30094b5381ad3 |
| statistics/ |