Resource

Id Histone_ChIP-seq/ENCSR000AKIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AKI [biosample_summary="Homo sapiens GM12878" and target="H4K20me1"]
Description
Labels
  • accession: ENCSR000AKI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-11-07T22:15:56.415072+00:00
  • date_released: 2011-02-10
  • doi: 10.17989/ENCSR000AKI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment: Fastq file ENCFF000AVC contains reads of mixed lengths. Read lengths followed by respective number of reads: (47, 7339603), (51, 11288718)
  • target: H4K20me1

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AKI float

Histone_ChIP-seq_ENCSR000AKI

Histone_ChIP-seq ENCSR000AKI [biosample_summary="Homo sapiens GM12878" and target="H4K20me1"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AKI [1.86, 9.04]
n
2,772,568
mean
4.4
sd
0.971

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 27725680.09% 7943
chr1 267065 0.11% 753
chr2 170393 0.07% 520
chr3 129798 0.07% 392
chr4 77788 0.04% 233
chr5 126209 0.07% 357
chr6 121419 0.07% 369
chr7 106086 0.07% 318
chr8 111803 0.08% 332
chr9 130909 0.09% 381
chr10 109073 0.08% 347
chr11 137059 0.10% 401
chr12 102375 0.08% 306
chr13 44264 0.04% 135
chr14 73676 0.07% 219
chr15 105261 0.10% 284
chr16 217782 0.24% 578
chr17 169645 0.20% 478
chr18 25180 0.03% 80
chr19 249030 0.42% 611
chr20 125235 0.19% 359
chr21 26842 0.06% 73
chr22 109801 0.22% 312
chrX 35875 0.02% 105
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 7943 190 2471 349.06 298
global segment-length histogram

Files

Filename Size md5
ENCFF308WNH.bed.gz 139.34 KB bc0959ea668b50865d6632297a85271a
ENCFF308WNH.tabix.bed.gz 77.3 KB 2ce6c35cbe0a81b4d34d8d7e21c8d447
ENCFF308WNH.tabix.bed.gz.tbi 49.3 KB ea8747dffd11534d0937b4ece0dfc975
genomic_resource.yaml 2.51 KB 04760e359a95e4570f9dd0f63dfa6420
statistics/