Resource
| Id | Histone_ChIP-seq/ENCSR000AKG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKG [biosample_summary="Homo sapiens GM12878" and target="H3K4me2"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN817KMK|/analyses/ENCAN817KMK/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN817KMK|/analyses/ENCAN817KMK/} has in progress subobject document {e0dcf38a-88f2-4505-a1c2-c980d065827c|/documents/e0dcf38a-88f2-4505-a1c2-c980d065827c/} audit_not_compliant: Processed alignments file {ENCFF008LEY|/files/ENCFF008LEY/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 7036715 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF081ODV|/files/ENCFF081ODV/} processed by ChIP-seq ENCODE4 v1.6.0 GRCh38 pipeline has 5911809 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me2-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKG | float |
Histone_ChIP-seq_ENCSR000AKG |
Histone_ChIP-seq ENCSR000AKG [biosample_summary="Homo sapiens GM12878" and target="H3K4me2"]
|
 |
[1.84, 31.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 82594055 | 2.57% | 91258 |
| chr1 | 8151053 | 3.27% | 8832 |
| chr2 | 6272335 | 2.59% | 7087 |
| chr3 | 5094166 | 2.57% | 5776 |
| chr4 | 3251499 | 1.71% | 3742 |
| chr5 | 4263229 | 2.35% | 4739 |
| chr6 | 5343509 | 3.13% | 5796 |
| chr7 | 3782900 | 2.37% | 4498 |
| chr8 | 3384886 | 2.33% | 3829 |
| chr9 | 3271098 | 2.36% | 3579 |
| chr10 | 3757540 | 2.81% | 4153 |
| chr11 | 4151319 | 3.07% | 4324 |
| chr12 | 4436034 | 3.33% | 4820 |
| chr13 | 1842383 | 1.61% | 2181 |
| chr14 | 2911801 | 2.72% | 3162 |
| chr15 | 2944333 | 2.89% | 3119 |
| chr16 | 3143914 | 3.48% | 3334 |
| chr17 | 4398805 | 5.28% | 4535 |
| chr18 | 1601070 | 1.99% | 1867 |
| chr19 | 3863724 | 6.59% | 3991 |
| chr20 | 2207149 | 3.42% | 2446 |
| chr21 | 873752 | 1.87% | 958 |
| chr22 | 1876006 | 3.69% | 1987 |
| chrX | 1771200 | 1.14% | 2501 |
| chrY | 350 | <0.01% | 2 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 91258 | 173 | 21851 | 905.06 | 630 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF283LNH.bed.gz | 1.88 MB | a86a7be6de9181649d58664db58cac72 |
| ENCFF283LNH.tabix.bed.gz | 930.14 KB | 8d70ddb87302a36dd061f0f3fb5e2cb8 |
| ENCFF283LNH.tabix.bed.gz.tbi | 253.76 KB | b9603eeeaf681aa579f194e8f94910a6 |
| genomic_resource.yaml | 2.61 KB | 62d0bc322e65f7bca0f3b6ab728a107d |
| statistics/ |