Resource
| Id | Histone_ChIP-seq/ENCSR000AKD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKD [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN726MRC|/analyses/ENCAN726MRC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN726MRC|/analyses/ENCAN726MRC/} has in progress subobject document {534d60ac-209b-4e4b-9ec6-e5205e4d1a84|/documents/534d60ac-209b-4e4b-9ec6-e5205e4d1a84/} audit_not_compliant: Processed alignments file {ENCFF633BHN|/files/ENCFF633BHN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 10101892 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF565DCK|/files/ENCFF565DCK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6346970 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKD | float |
Histone_ChIP-seq_ENCSR000AKD |
Histone_ChIP-seq ENCSR000AKD [biosample_summary="Homo sapiens GM12878" and target="H3K27me3"]
|
 |
[2.01, 10] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10101017 | 0.31% | 25268 |
| chr1 | 1068974 | 0.43% | 2704 |
| chr2 | 948248 | 0.39% | 2332 |
| chr3 | 658240 | 0.33% | 1701 |
| chr4 | 433908 | 0.23% | 1050 |
| chr5 | 528559 | 0.29% | 1335 |
| chr6 | 697775 | 0.41% | 1706 |
| chr7 | 477470 | 0.30% | 1163 |
| chr8 | 435455 | 0.30% | 1117 |
| chr9 | 440002 | 0.32% | 1112 |
| chr10 | 528972 | 0.40% | 1376 |
| chr11 | 699457 | 0.52% | 1758 |
| chr12 | 527741 | 0.40% | 1308 |
| chr13 | 256539 | 0.22% | 632 |
| chr14 | 292130 | 0.27% | 717 |
| chr15 | 371661 | 0.36% | 911 |
| chr16 | 207355 | 0.23% | 539 |
| chr17 | 459023 | 0.55% | 1040 |
| chr18 | 231638 | 0.29% | 592 |
| chr19 | 187571 | 0.32% | 426 |
| chr20 | 331992 | 0.52% | 869 |
| chr21 | 70955 | 0.15% | 172 |
| chr22 | 143734 | 0.28% | 377 |
| chrX | 103618 | 0.07% | 331 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 25268 | 210 | 3390 | 399.76 | 324 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF291DHI.bed.gz | 420.41 KB | 7de99dd8ded03be57595a07474f34ebb |
| ENCFF291DHI.tabix.bed.gz | 235.57 KB | 0c7da97d31f37137a6a404757f31c299 |
| ENCFF291DHI.tabix.bed.gz.tbi | 123.22 KB | 2381d2778363472cce58b3aa1a7644f9 |
| genomic_resource.yaml | 2.62 KB | 73f1f04869d340662bf66ed6b67b141e |
| statistics/ |