Resource
| Id | Histone_ChIP-seq/ENCSR000AKC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR000AKC [biosample_summary="Homo sapiens GM12878" and target="H3K27ac"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN294OHP|/analyses/ENCAN294OHP/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN294OHP|/analyses/ENCAN294OHP/} has in progress subobject document {f3882758-5d8c-4e9c-b3bf-90d2230fc8f4|/documents/f3882758-5d8c-4e9c-b3bf-90d2230fc8f4/} audit_not_compliant: Processed alignments file {ENCFF269GKF|/files/ENCFF269GKF/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 6941456 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF201OHW|/files/ENCFF201OHW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 5756711 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000AKC | float |
Histone_ChIP-seq_ENCSR000AKC |
Histone_ChIP-seq ENCSR000AKC [biosample_summary="Homo sapiens GM12878" and target="H3K27ac"]
|
 |
[2.09, 95.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 61205122 | 1.90% | 53689 |
| chr1 | 5771856 | 2.32% | 4995 |
| chr2 | 4672459 | 1.93% | 4062 |
| chr3 | 3739207 | 1.89% | 3467 |
| chr4 | 2297596 | 1.21% | 2093 |
| chr5 | 3262759 | 1.80% | 2818 |
| chr6 | 4028712 | 2.36% | 3406 |
| chr7 | 2740591 | 1.72% | 2580 |
| chr8 | 2479669 | 1.71% | 2174 |
| chr9 | 2396264 | 1.73% | 2047 |
| chr10 | 2832039 | 2.12% | 2504 |
| chr11 | 2898104 | 2.15% | 2551 |
| chr12 | 3386131 | 2.54% | 2829 |
| chr13 | 1338239 | 1.17% | 1203 |
| chr14 | 2361851 | 2.21% | 1993 |
| chr15 | 2263636 | 2.22% | 1947 |
| chr16 | 2261294 | 2.50% | 2052 |
| chr17 | 3143711 | 3.78% | 2666 |
| chr18 | 1264619 | 1.57% | 1126 |
| chr19 | 2741947 | 4.68% | 2417 |
| chr20 | 1633362 | 2.53% | 1443 |
| chr21 | 679877 | 1.46% | 563 |
| chr22 | 1433954 | 2.82% | 1240 |
| chrX | 1577245 | 1.01% | 1513 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 53689 | 188 | 28186 | 1139.99 | 714 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF023LTU.bed.gz | 1.22 MB | 16a3e221b461a64e7ec9bf8ab83c5e22 |
| ENCFF023LTU.tabix.bed.gz | 573.87 KB | a7155536cb9501787fa84e1b4065acfa |
| ENCFF023LTU.tabix.bed.gz.tbi | 178.95 KB | 152382d3bdade381e59ddc4449418127 |
| genomic_resource.yaml | 2.61 KB | 4c7bd7e8127e6a9778c9d2ec880a876e |
| statistics/ |