Resource

Id Histone_ChIP-seq/ENCSR000AKAcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR000AKA [biosample_summary="Homo sapiens GM12878" and target="H3K4me3"]
Description
Labels
  • accession: ENCSR000AKA
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002784/
  • biosample_summary: Homo sapiens GM12878
  • date_created: 2013-11-07T22:16:02.343751+00:00
  • date_released: 2011-02-10
  • doi: 10.17989/ENCSR000AKA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: isogenic
  • simple_biosample_summary:
  • status: released
  • submitter_comment:
  • target: H3K4me3

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR000AKA float

Histone_ChIP-seq_ENCSR000AKA
Histone_ChIP-seq ENCSR000AKA [biosample_summary="Homo sapiens GM12878" and target="H3K4me3"]
 HISTOGRAM FOR Histone_ChIP-seq_ENCSR000AKA [1.88, 24.5]
n
42,336,213
mean
7.66
sd
3.75

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 423362131.32% 56360
chr1 4165457 1.67% 5434
chr2 3177295 1.31% 4225
chr3 2600387 1.31% 3356
chr4 1723904 0.91% 2268
chr5 2236893 1.23% 2929
chr6 2864093 1.68% 3788
chr7 1921260 1.21% 2564
chr8 1692522 1.17% 2336
chr9 1667645 1.20% 2193
chr10 1863681 1.39% 2559
chr11 2130350 1.58% 2734
chr12 2379476 1.79% 3081
chr13 966823 0.85% 1283
chr14 1498324 1.40% 2010
chr15 1497589 1.47% 1999
chr16 1543676 1.71% 2106
chr17 2222419 2.67% 2954
chr17_GL000205v2_random 3922 2.11% 3
chr18 776968 0.97% 1052
chr19 2058553 3.51% 2794
chr20 1041177 1.62% 1425
chr21 436535 0.93% 584
chr22 883919 1.74% 1209
chrUn_GL000195v1 292 0.16% 1
chrUn_GL000219v1 887 0.49% 3
chrX 982166 0.63% 1470
3340 contigs with no values (185756815 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 56360 175 10195 751.17 488
global segment-length histogram

Files

Filename Size md5
ENCFF228GWY.bed.gz 1.21 MB 2e17d082e69488b174f2878f89eeebfb
ENCFF228GWY.tabix.bed.gz 604.13 KB 538cadf45951da92be74c80a90b1a25a
ENCFF228GWY.tabix.bed.gz.tbi 179.47 KB e61e1d4aab056d47c23f38f0433ff7e9
genomic_resource.yaml 1.86 KB 1b3de703ea45a3aa8fc098aaa891231e
statistics/