DNase-seq_ENCSR999TSD
DNase-seq ENCSR999TSD [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"]
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| Id: | DNase-seq/ENCSR999TSD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR999TSD [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF491SJZ|/files/ENCFF491SJZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN335VDP|/analyses/ENCAN335VDP/} has in progress subobject document {1dcd5c09-55b7-4c07-be4c-e784e2168a8a|/documents/1dcd5c09-55b7-4c07-be4c-e784e2168a8a/} audit_internal_action: Released analysis {ENCAN335VDP|/analyses/ENCAN335VDP/} has in progress subobject document {a3b26470-4c20-460c-aee3-66237057abeb|/documents/a3b26470-4c20-460c-aee3-66237057abeb/} |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR999TSD | float |
DNase-seq_ENCSR999TSD |
DNase-seq ENCSR999TSD [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"]
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[0.0242, 5.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF501BUN.bed.gz | 971.38 KB | 80eee6aad3ff1e20c1603ef6280f156d |
| ENCFF501BUN.bed.gz.dvc | 100.0 B | f7650cbc3a07b4bfda49dba5dd54597e |
| ENCFF501BUN.tabix.bed.gz | 929.75 KB | 5cfc9c08c599b29e1b71a4192f5d6b77 |
| ENCFF501BUN.tabix.bed.gz.dvc | 106.0 B | a6b90cc75f3cc2c43e238d1c64c6aa4c |
| ENCFF501BUN.tabix.bed.gz.tbi | 198.44 KB | 94ab7ad32a1a37fdfc9e944bf1d4dbab |
| ENCFF501BUN.tabix.bed.gz.tbi.dvc | 110.0 B | 2646c3da041ad67a5b0f59fe656ad9fd |
| genomic_resource.yaml | 2.47 KB | 0c51c31db609d258737d3daa7dd74e4a |
| genomic_resource_original.yaml | 2.37 KB | 75c98b09792e7d7bb4613bfd9d4c375b |
| statistics/ |