Resource
| Id | DNase-seq/ENCSR999TSD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR999TSD [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (51 years) output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF491SJZ|/files/ENCFF491SJZ/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.17. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN335VDP|/analyses/ENCAN335VDP/} has in progress subobject document {1dcd5c09-55b7-4c07-be4c-e784e2168a8a|/documents/1dcd5c09-55b7-4c07-be4c-e784e2168a8a/} audit_internal_action: Released analysis {ENCAN335VDP|/analyses/ENCAN335VDP/} has in progress subobject document {a3b26470-4c20-460c-aee3-66237057abeb|/documents/a3b26470-4c20-460c-aee3-66237057abeb/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR999TSD | float |
DNase-seq_ENCSR999TSD |
DNase-seq ENCSR999TSD [biosample_summary="Homo sapiens coronary artery tissue female adult (51 years)"]
|
 |
[0.0242, 5.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 22114335 | 0.69% | 102433 |
| chr1 | 1890667 | 0.76% | 8534 |
| chr2 | 2322387 | 0.96% | 10665 |
| chr3 | 1286426 | 0.65% | 5842 |
| chr4 | 547194 | 0.29% | 2521 |
| chr5 | 1196417 | 0.66% | 5498 |
| chr6 | 1031293 | 0.60% | 4837 |
| chr7 | 1043080 | 0.65% | 4800 |
| chr8 | 1014885 | 0.70% | 4788 |
| chr9 | 918916 | 0.66% | 4307 |
| chr10 | 1750337 | 1.31% | 8067 |
| chr11 | 1220248 | 0.90% | 5549 |
| chr12 | 731257 | 0.55% | 3417 |
| chr13 | 551036 | 0.48% | 2612 |
| chr14 | 696044 | 0.65% | 3238 |
| chr15 | 915335 | 0.90% | 4316 |
| chr16 | 611011 | 0.68% | 2970 |
| chr17 | 741968 | 0.89% | 3493 |
| chr18 | 655379 | 0.82% | 3027 |
| chr19 | 734870 | 1.25% | 3387 |
| chr20 | 739370 | 1.15% | 3417 |
| chr21 | 350886 | 0.75% | 1613 |
| chr22 | 494807 | 0.97% | 2308 |
| chrX | 669560 | 0.43% | 3219 |
| chrY | 962 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102433 | 1 | 1296 | 215.89 | 200 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF501BUN.bed.gz | 971.38 KB | 80eee6aad3ff1e20c1603ef6280f156d |
| ENCFF501BUN.tabix.bed.gz | 929.75 KB | 5cfc9c08c599b29e1b71a4192f5d6b77 |
| ENCFF501BUN.tabix.bed.gz.tbi | 198.44 KB | 94ab7ad32a1a37fdfc9e944bf1d4dbab |
| genomic_resource.yaml | 2.47 KB | 0c51c31db609d258737d3daa7dd74e4a |
| statistics/ |