| Id: | DNase-seq/ENCSR998IXQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR998IXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour output_type: peaks audit_warning: Alignment file {ENCFF600VPS|/files/ENCFF600VPS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 33222490 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR998IXQ | float |
DNase-seq_ENCSR998IXQ |
DNase-seq ENCSR998IXQ [biosample_summary="Homo sapiens stimulated activated CD4-positive, alpha-beta T cell male adult (38 years) treated with anti-CD3 and anti-CD28 coated beads for 1 hour, 100 ng/mL Interleukin-15 for 1 hour"]
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[0.302, 69.4] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF543RBB.bed.gz | 442.04 KB | c6a8123bf8a3107c9192dcbeb0b977ac |
| ENCFF543RBB.bed.gz.dvc | 100.0 B | 8115ec88b3b00a971079c9f05bd86f99 |
| ENCFF543RBB.tabix.bed.gz | 400.76 KB | 18eaaab2db1b9c47eb487167f8842fa3 |
| ENCFF543RBB.tabix.bed.gz.dvc | 106.0 B | 18a43b18c05c2830fd88bd9a2ff501d1 |
| ENCFF543RBB.tabix.bed.gz.tbi | 199.77 KB | 47c2c3c0cbe3f5bc9d05c367a8dbdb6c |
| ENCFF543RBB.tabix.bed.gz.tbi.dvc | 110.0 B | 0ad70a867c4aba2edd7507930d214211 |
| genomic_resource.yaml | 2.42 KB | 6bc79ce21d7f046c66b59f42d34fb5fe |
| genomic_resource_original.yaml | 2.2 KB | 8cff8e7c278a89627da7b792e8cf719f |
| statistics/ |