DNase-seq_ENCSR995YPS
DNase-seq ENCSR995YPS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)"]
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| Id: | DNase-seq/ENCSR995YPS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR995YPS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (87 years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF984QXK|/files/ENCFF984QXK/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR995YPS | float |
DNase-seq_ENCSR995YPS |
DNase-seq ENCSR995YPS [biosample_summary="Homo sapiens with mild cognitive impairment; dorsolateral prefrontal cortex tissue female adult (87 years)"]
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[0.0582, 13.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF639OCZ.bed.gz | 735.58 KB | 25875ddd9558184fd2611285d547848e |
| ENCFF639OCZ.bed.gz.dvc | 100.0 B | 3c1377255851b4497edb7d81831cd382 |
| ENCFF639OCZ.tabix.bed.gz | 671.03 KB | 37a60af70362a92742ed356628d3d72e |
| ENCFF639OCZ.tabix.bed.gz.dvc | 106.0 B | 11e1d4c9414a529ec39e10672d1809f8 |
| ENCFF639OCZ.tabix.bed.gz.tbi | 274.27 KB | b4d17051bf038b87a18fef6f1dcd492c |
| ENCFF639OCZ.tabix.bed.gz.tbi.dvc | 110.0 B | 54a533aa386d3ea7af6b88825e816ab3 |
| genomic_resource.yaml | 2.26 KB | c51625518893990b5287694444107940 |
| genomic_resource_original.yaml | 2.11 KB | 12dbbc29793264b6ba82334e37be1a8d |
| statistics/ |