DNase-seq_ENCSR994KTY
DNase-seq ENCSR994KTY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
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| Id: | DNase-seq/ENCSR994KTY |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR994KTY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: peaks audit_internal_action: Released file {ENCFF769AMF|/files/ENCFF769AMF/} has replaced subobject file {a5d54917-b85b-46d5-8572-97dc97083084|/files/a5d54917-b85b-46d5-8572-97dc97083084/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF018RLE|/files/ENCFF018RLE/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR994KTY | float |
DNase-seq_ENCSR994KTY |
DNase-seq ENCSR994KTY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
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[0.0445, 12.5] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF769AMF.bed.gz | 1.11 MB | 0ba5ebbfe911d5d7b54feaa6c5182e56 |
| ENCFF769AMF.bed.gz.dvc | 101.0 B | a95447cfd36689cff8ab973e206ae11c |
| ENCFF769AMF.tabix.bed.gz | 1.04 MB | 468a10412ca8b06eee63fcbeb7ca307b |
| ENCFF769AMF.tabix.bed.gz.dvc | 107.0 B | c3b831ce5f9bb88e0a0b18f9c2abd1c1 |
| ENCFF769AMF.tabix.bed.gz.tbi | 228.78 KB | ed9b2743a2751418c46ee5a1b05c12f0 |
| ENCFF769AMF.tabix.bed.gz.tbi.dvc | 110.0 B | 09e984add16c8dbe9136e04f9cd72eca |
| genomic_resource.yaml | 2.24 KB | 47742cf3962431dadc574899498992d9 |
| genomic_resource_original.yaml | 2.13 KB | 10e04972acb392240f96849a786d552a |
| statistics/ |