Resource

Id DNase-seq/ENCSR994KTYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR994KTY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR994KTY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000317/
  • biosample_summary: Homo sapiens colonic mucosa tissue female adult (41 years)
  • date_created: 2021-06-17T16:21:22.575942+00:00
  • date_released: 2021-08-31
  • doi: 10.17989/ENCSR994KTY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR994KTY float

DNase-seq_ENCSR994KTY
DNase-seq ENCSR994KTY [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR994KTY [0.0445, 12.5]
n
22,613,053
mean
0.793
sd
1.12

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 226130530.70% 113881
chr1 1939767 0.78% 9790
chr2 1919786 0.79% 9553
chr3 1060984 0.54% 5346
chr4 686710 0.36% 3448
chr5 896980 0.49% 4516
chr6 841148 0.49% 4327
chr7 1245960 0.78% 6228
chr8 942584 0.65% 4622
chr9 1076524 0.78% 5426
chr10 1370901 1.02% 6828
chr11 1403781 1.04% 7004
chr12 808010 0.61% 4172
chr13 398651 0.35% 2005
chr14 828654 0.77% 4236
chr15 810358 0.79% 4127
chr16 961666 1.06% 4982
chr17 1436530 1.73% 7285
chr18 333081 0.41% 1710
chr19 932608 1.59% 4758
chr20 814381 1.26% 4128
chr21 429465 0.92% 2102
chr22 1028723 2.02% 4965
chrX 444661 0.28% 2313
chrY 1140 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 113881 1 1120 198.57 180
global segment-length histogram

Files

Filename Size md5
ENCFF769AMF.bed.gz 1.11 MB 0ba5ebbfe911d5d7b54feaa6c5182e56
ENCFF769AMF.tabix.bed.gz 1.04 MB 468a10412ca8b06eee63fcbeb7ca307b
ENCFF769AMF.tabix.bed.gz.tbi 228.78 KB ed9b2743a2751418c46ee5a1b05c12f0
genomic_resource.yaml 2.24 KB 47742cf3962431dadc574899498992d9
statistics/