Resource

Id DNase-seq/ENCSR990XXCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR990XXC [biosample_summary="Homo sapiens right kidney tissue male embryo (115 days)"]
Description
Labels
  • accession: ENCSR990XXC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004539/
  • biosample_summary: Homo sapiens right kidney tissue male embryo (115 days)
  • date_created: 2015-09-16T21:43:05.819354+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR990XXC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (115 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR990XXC float

DNase-seq_ENCSR990XXC
DNase-seq ENCSR990XXC [biosample_summary="Homo sapiens right kidney tissue male embryo (115 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR990XXC [3, 2.61e+03]
n
16,323,230
mean
58.7
sd
70.3

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 163232300.51% 108448
chr1 1452513 0.58% 9656
chr2 1305618 0.54% 8676
chr3 1053993 0.53% 6992
chr4 891094 0.47% 5915
chr5 908777 0.50% 6041
chr6 981309 0.57% 6526
chr7 842443 0.53% 5598
chr8 762202 0.53% 5066
chr9 681590 0.49% 4534
chr10 791961 0.59% 5261
chr11 840252 0.62% 5581
chr12 809461 0.61% 5375
chr13 460085 0.40% 3054
chr14 531058 0.50% 3526
chr15 549342 0.54% 3653
chr16 527050 0.58% 3504
chr17 657334 0.79% 4369
chr18 397698 0.49% 2639
chr19 537950 0.92% 3572
chr20 418774 0.65% 2786
chr21 187901 0.40% 1246
chr22 281622 0.55% 1875
chrX 433742 0.28% 2874
chrY 19461 0.03% 129
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 108448 11 450 150.52 150
global segment-length histogram

Files

Filename Size md5
ENCFF653DQL.bed.gz 1.02 MB 817953edc922d6a397bd7205efcac255
ENCFF653DQL.tabix.bed.gz 900.18 KB db73414d8af3600d82bcece44d90cb06
ENCFF653DQL.tabix.bed.gz.tbi 485.23 KB a7f11869c6f69ff99e6edc98f5d2c66c
genomic_resource.yaml 1.4 KB fd4d648f4d6c682aa55228d411832e01
statistics/