Resource
| Id | DNase-seq/ENCSR989YIV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR989YIV [biosample_summary="Homo sapiens placenta tissue male embryo (91 days)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN136ZGK|/analyses/ENCAN136ZGK/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF762BTX|/files/ENCFF762BTX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28335421 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF980XRG|/files/ENCFF980XRG/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28066066 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR989YIV | float |
DNase-seq_ENCSR989YIV |
DNase-seq ENCSR989YIV [biosample_summary="Homo sapiens placenta tissue male embryo (91 days)"]
|
 |
[3, 544] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 12759760 | 0.40% | 84913 |
| chr1 | 1225899 | 0.49% | 8158 |
| chr2 | 1028642 | 0.42% | 6846 |
| chr3 | 847894 | 0.43% | 5647 |
| chr4 | 644850 | 0.34% | 4293 |
| chr5 | 713666 | 0.39% | 4751 |
| chr6 | 802981 | 0.47% | 5343 |
| chr7 | 668132 | 0.42% | 4442 |
| chr8 | 565222 | 0.39% | 3760 |
| chr9 | 542004 | 0.39% | 3605 |
| chr10 | 585065 | 0.44% | 3892 |
| chr11 | 625941 | 0.46% | 4168 |
| chr12 | 632406 | 0.47% | 4207 |
| chr13 | 315219 | 0.28% | 2092 |
| chr14 | 396458 | 0.37% | 2635 |
| chr15 | 416145 | 0.41% | 2767 |
| chr16 | 399537 | 0.44% | 2659 |
| chr17 | 512181 | 0.62% | 3415 |
| chr18 | 274549 | 0.34% | 1828 |
| chr19 | 495943 | 0.85% | 3301 |
| chr20 | 330773 | 0.51% | 2200 |
| chr21 | 144279 | 0.31% | 961 |
| chr22 | 223950 | 0.44% | 1491 |
| chrX | 344474 | 0.22% | 2295 |
| chrY | 23550 | 0.04% | 157 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 84913 | 8 | 300 | 150.27 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF444VNW.bed.gz | 825.66 KB | a38faa8bce73617c796b6067689b8cbc |
| ENCFF444VNW.tabix.bed.gz | 706.34 KB | 1c21b9fa39e932040e199b4316ccf03b |
| ENCFF444VNW.tabix.bed.gz.tbi | 415.27 KB | 8d4b53860d1e4627a73e77e5c1b81f5b |
| genomic_resource.yaml | 2.58 KB | 00fc077403040d5db2cf055543e4df5b |
| statistics/ |