DNase-seq_ENCSR989YIV
DNase-seq ENCSR989YIV [biosample_summary="Homo sapiens placenta tissue male embryo (91 days)"]
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| Id: | DNase-seq/ENCSR989YIV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR989YIV [biosample_summary="Homo sapiens placenta tissue male embryo (91 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (91 days) output_type: peaks audit_internal_action: Archived analysis {ENCAN136ZGK|/analyses/ENCAN136ZGK/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Alignment file {ENCFF762BTX|/files/ENCFF762BTX/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28335421 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) audit_warning: Alignment file {ENCFF980XRG|/files/ENCFF980XRG/} processed by DNase-seq ENCODE3 GRCh38 pipeline ( {ENCPL001DNS|/pipelines/ENCPL001DNS/} ) for GRCh38 assembly has 28066066 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR989YIV | float |
DNase-seq_ENCSR989YIV |
DNase-seq ENCSR989YIV [biosample_summary="Homo sapiens placenta tissue male embryo (91 days)"]
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[3, 544] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF444VNW.bed.gz | 825.66 KB | a38faa8bce73617c796b6067689b8cbc |
| ENCFF444VNW.bed.gz.dvc | 100.0 B | d4ca1155cced132bb04282452d8d8c01 |
| ENCFF444VNW.tabix.bed.gz | 706.34 KB | 1c21b9fa39e932040e199b4316ccf03b |
| ENCFF444VNW.tabix.bed.gz.dvc | 106.0 B | df5861285bcc722381d4219f87655ed7 |
| ENCFF444VNW.tabix.bed.gz.tbi | 415.27 KB | 8d4b53860d1e4627a73e77e5c1b81f5b |
| ENCFF444VNW.tabix.bed.gz.tbi.dvc | 110.0 B | c75fb08b2003139158d7a49786e4d578 |
| genomic_resource.yaml | 2.58 KB | 00fc077403040d5db2cf055543e4df5b |
| genomic_resource_original.yaml | 2.48 KB | 2d9fbef4e75045bbafeb572b454ce7d2 |
| statistics/ |