DNase-seq_ENCSR988YKR
DNase-seq ENCSR988YKR [biosample_summary="Homo sapiens kidney capillary endothelial cell female embryo (113 days)"]
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| Id: | DNase-seq/ENCSR988YKR |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR988YKR [biosample_summary="Homo sapiens kidney capillary endothelial cell female embryo (113 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female embryo (113 days) output_type: peaks audit_internal_action: Released analysis {ENCAN868VKA|/analyses/ENCAN868VKA/} has in progress subobject document {9395f665-bbd3-44b6-adf9-ac794f6f6b20|/documents/9395f665-bbd3-44b6-adf9-ac794f6f6b20/} audit_internal_action: Released analysis {ENCAN868VKA|/analyses/ENCAN868VKA/} has in progress subobject document {d6330389-d6ea-4031-84e4-47ed3b69b728|/documents/d6330389-d6ea-4031-84e4-47ed3b69b728/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF033OTC|/files/ENCFF033OTC/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.25. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR988YKR | float |
DNase-seq_ENCSR988YKR |
DNase-seq ENCSR988YKR [biosample_summary="Homo sapiens kidney capillary endothelial cell female embryo (113 days)"]
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[0.0582, 4.94] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF382ZAU.bed.gz | 1.15 MB | 30771eeba3943b831c19f9e9a7844daf |
| ENCFF382ZAU.bed.gz.dvc | 101.0 B | 8afa45a7dc8ca3b9249e8b6e17bfc6c0 |
| ENCFF382ZAU.tabix.bed.gz | 1.06 MB | c3924ed57537c2b7104247f6de832f7b |
| ENCFF382ZAU.tabix.bed.gz.dvc | 107.0 B | a97486978c2de6bdaf885c011cfaff7c |
| ENCFF382ZAU.tabix.bed.gz.tbi | 460.12 KB | 503be0b2064746ad2aaab8fc3ecb0359 |
| ENCFF382ZAU.tabix.bed.gz.tbi.dvc | 110.0 B | 5cb32fc31829547bdd140b0b1a02f952 |
| genomic_resource.yaml | 2.52 KB | 11978d58b058868a7cc81d36ed973c6e |
| genomic_resource_original.yaml | 2.4 KB | 6ab0a0ab089252ed7bc198de6f573447 |
| statistics/ |