DNase-seq_ENCSR986HEN
DNase-seq ENCSR986HEN [biosample_summary="Homo sapiens right renal pelvis tissue male embryo (105 days)"]
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| Id: | DNase-seq/ENCSR986HEN |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR986HEN [biosample_summary="Homo sapiens right renal pelvis tissue male embryo (105 days)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male embryo (105 days) output_type: peaks audit_warning: Alignment file {ENCFF288NSD|/files/ENCFF288NSD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ( {ENCPL848KLD|/pipelines/ENCPL848KLD/} ) for GRCh38 assembly has 30365668 mapped reads. According to ENCODE standards, conventional DNase-seq profile requires a minimum of 20 million uniquely mapped reads to generate a reliable SPOT (Signal Portion of Tags) score. The recommended value is > 50 million. For deep, foot-printing depth DNase-seq 150-200 million uniquely mapped reads are recommended. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF288NSD|/files/ENCFF288NSD/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR986HEN | float |
DNase-seq_ENCSR986HEN |
DNase-seq ENCSR986HEN [biosample_summary="Homo sapiens right renal pelvis tissue male embryo (105 days)"]
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[0.265, 16.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF581IEQ.bed.gz | 542.03 KB | 85540114b4f66817d3c77a6cf5f5dab1 |
| ENCFF581IEQ.bed.gz.dvc | 100.0 B | bb3f75bd381fa2ae6c9bb56dad1c420d |
| ENCFF581IEQ.tabix.bed.gz | 482.0 KB | 0a275ff996238979b0bdc5f747b7272b |
| ENCFF581IEQ.tabix.bed.gz.dvc | 106.0 B | 4c83cd244a834a82600b86286c5f75e6 |
| ENCFF581IEQ.tabix.bed.gz.tbi | 296.47 KB | 9b452a69ca2e34d4fe94c5c6779d0d95 |
| ENCFF581IEQ.tabix.bed.gz.tbi.dvc | 110.0 B | a72a2365368f26dee85de5b9906564bc |
| genomic_resource.yaml | 2.68 KB | 1b02b4973583dc49d1f4bc5bd774f4bb |
| genomic_resource_original.yaml | 2.57 KB | 11f8caef29d467bc76afb4bc85466d60 |
| statistics/ |