Resource
| Id | DNase-seq/ENCSR984SQJ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR984SQJ [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (53 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN721TXL|/analyses/ENCAN721TXL/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF519DNI|/files/ENCFF519DNI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR984SQJ | float |
DNase-seq_ENCSR984SQJ |
DNase-seq ENCSR984SQJ [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (53 years)"]
|
 |
[6, 2.35e+04] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10207478 | 0.32% | 67739 |
| chr1 | 970480 | 0.39% | 6443 |
| chr2 | 863850 | 0.36% | 5720 |
| chr3 | 589166 | 0.30% | 3917 |
| chr4 | 339937 | 0.18% | 2257 |
| chr5 | 531992 | 0.29% | 3520 |
| chr6 | 488823 | 0.29% | 3252 |
| chr7 | 438983 | 0.28% | 2915 |
| chr8 | 493142 | 0.34% | 3271 |
| chr9 | 457559 | 0.33% | 3040 |
| chr10 | 608951 | 0.46% | 4033 |
| chr11 | 575916 | 0.43% | 3823 |
| chr12 | 459027 | 0.34% | 3043 |
| chr13 | 202797 | 0.18% | 1348 |
| chr14 | 336943 | 0.31% | 2241 |
| chr15 | 411816 | 0.40% | 2735 |
| chr16 | 362927 | 0.40% | 2415 |
| chr17 | 476182 | 0.57% | 3164 |
| chr18 | 192564 | 0.24% | 1278 |
| chr19 | 464063 | 0.79% | 3086 |
| chr20 | 340408 | 0.53% | 2251 |
| chr21 | 114526 | 0.25% | 763 |
| chr22 | 241477 | 0.48% | 1601 |
| chrX | 243849 | 0.16% | 1609 |
| chrY | 2100 | <0.01% | 14 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 67739 | 6 | 450 | 150.69 | 150 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF532UXX.bed.gz | 671.55 KB | 15b6df91e877dd83f1777243aef75e1c |
| ENCFF532UXX.tabix.bed.gz | 572.04 KB | 78561fab8bcdf621bacbfb0c594fb7aa |
| ENCFF532UXX.tabix.bed.gz.tbi | 270.47 KB | 150060fc619f234994ff49987f3e4f49 |
| genomic_resource.yaml | 2.26 KB | e551175232cf753d1e6edfffd586b2e6 |
| statistics/ |