DNase-seq_ENCSR984SQJ
DNase-seq ENCSR984SQJ [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (53 years)"]
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| Id: | DNase-seq/ENCSR984SQJ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR984SQJ [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (53 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (53 years) output_type: peaks audit_internal_action: Archived analysis {ENCAN721TXL|/analyses/ENCAN721TXL/} has in progress subobject quality standard {encode3-dnase|/quality-standards/encode3-dnase/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF519DNI|/files/ENCFF519DNI/} processed by DNase-seq ENCODE3 GRCh38 pipeline ({ENCPL202DNS|/pipelines/ENCPL202DNS/}) for GRCh38 assembly have a SPOT1 score of 0.28. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR984SQJ | float |
DNase-seq_ENCSR984SQJ |
DNase-seq ENCSR984SQJ [biosample_summary="Homo sapiens right atrium auricular region tissue female adult (53 years)"]
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[6, 2.35e+04] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF532UXX.bed.gz | 671.55 KB | 15b6df91e877dd83f1777243aef75e1c |
| ENCFF532UXX.bed.gz.dvc | 100.0 B | 7829c5e3818a52a3c9be24c00e11e0c6 |
| ENCFF532UXX.tabix.bed.gz | 572.04 KB | 78561fab8bcdf621bacbfb0c594fb7aa |
| ENCFF532UXX.tabix.bed.gz.dvc | 106.0 B | c4b730e5f97f81215a8ba1650357fd41 |
| ENCFF532UXX.tabix.bed.gz.tbi | 270.47 KB | 150060fc619f234994ff49987f3e4f49 |
| ENCFF532UXX.tabix.bed.gz.tbi.dvc | 110.0 B | f7297ec83593b795fb05d115e63892e4 |
| genomic_resource.yaml | 2.26 KB | e551175232cf753d1e6edfffd586b2e6 |
| genomic_resource_original.yaml | 2.14 KB | d80efc490d4da0edd2a058fba9715b2d |
| statistics/ |