DNase-seq_ENCSR984SDD
DNase-seq ENCSR984SDD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
×
| Id: | DNase-seq/ENCSR984SDD |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR984SDD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: female adult (90 or above years) with mild cognitive impairment output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF903EVF|/files/ENCFF903EVF/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR984SDD | float |
DNase-seq_ENCSR984SDD |
DNase-seq ENCSR984SDD [biosample_summary="Homo sapiens with mild cognitive impairment; head of caudate nucleus tissue female adult (90 or above years)"]
|
|
[0.0733, 14.9] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF333NJK.bed.gz | 710.2 KB | ab0c139616c2714b884ca0a63f8a5454 |
| ENCFF333NJK.bed.gz.dvc | 100.0 B | a22a0ef54caf67ffd7e9df1d86cc964b |
| ENCFF333NJK.tabix.bed.gz | 643.12 KB | 90581966ba3d503ecdc2bb98eb96bda8 |
| ENCFF333NJK.tabix.bed.gz.dvc | 106.0 B | 9a42bd20ad601d6dc48adb65f9de985f |
| ENCFF333NJK.tabix.bed.gz.tbi | 306.55 KB | 3c342951fa1ccb895f172d1e5c87e8d5 |
| ENCFF333NJK.tabix.bed.gz.tbi.dvc | 110.0 B | 5198ab9e1f4d2310350d54069ec9782c |
| genomic_resource.yaml | 2.28 KB | 3dd255060a7e14026665e960ba02a922 |
| genomic_resource_original.yaml | 2.12 KB | febafc4cb0663ab2b11d142e7e34265e |
| statistics/ |