Resource

Id DNase-seq/ENCSR984HIYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR984HIY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
Description
Labels
  • accession: ENCSR984HIY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000625/
  • biosample_summary: Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)
  • date_created: 2020-04-20T23:45:26.632320+00:00
  • date_released: 2020-10-05
  • doi: 10.17989/ENCSR984HIY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (38 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR984HIY float

DNase-seq_ENCSR984HIY
DNase-seq ENCSR984HIY [biosample_summary="Homo sapiens CD8-positive, alpha-beta T cell male adult (38 years)"]
 HISTOGRAM FOR DNase-seq_ENCSR984HIY [0.406, 54.3]
n
5,533,968
mean
6.33
sd
6.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 55339680.17% 30970
chr1 566378 0.23% 3171
chr2 386160 0.16% 2187
chr3 302499 0.15% 1719
chr4 184077 0.10% 1037
chr5 248026 0.14% 1387
chr6 315020 0.18% 1769
chr7 259350 0.16% 1443
chr8 198397 0.14% 1117
chr9 214515 0.16% 1193
chr10 235534 0.18% 1348
chr11 288321 0.21% 1604
chr12 283907 0.21% 1583
chr13 110387 0.10% 606
chr14 193266 0.18% 1072
chr15 180262 0.18% 1021
chr16 234459 0.26% 1296
chr17 339480 0.41% 1897
chr18 80178 0.10% 455
chr19 396175 0.68% 2125
chr20 153361 0.24% 875
chr21 66590 0.14% 381
chr22 135270 0.27% 774
chrX 155080 0.10% 871
chrY 7276 0.01% 39
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 30970 1 690 178.69 180
global segment-length histogram

Files

Filename Size md5
ENCFF512HSM.bed.gz 340.16 KB 32876b1f4f5d6b45c1fcd2d8537268f5
ENCFF512HSM.tabix.bed.gz 304.96 KB 3f7a2b1f08ca70fba9b6b8044c71e926
ENCFF512HSM.tabix.bed.gz.tbi 180.28 KB befbb11caa73a7072443806d92d9f514
genomic_resource.yaml 1.87 KB 7b52f30268c9ecd1dc5558f06cc511d5
statistics/