Resource
| Id | DNase-seq/ENCSR982XOK |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR982XOK [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (71 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF158LPS|/files/ENCFF158LPS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR982XOK | float |
DNase-seq_ENCSR982XOK |
DNase-seq ENCSR982XOK [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)"]
|
 |
[0.0931, 12.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 5795421 | 0.18% | 31816 |
| chr1 | 548285 | 0.22% | 3009 |
| chr2 | 446887 | 0.18% | 2475 |
| chr3 | 304662 | 0.15% | 1691 |
| chr4 | 186621 | 0.10% | 1026 |
| chr5 | 286159 | 0.16% | 1584 |
| chr6 | 301305 | 0.18% | 1651 |
| chr7 | 265936 | 0.17% | 1451 |
| chr8 | 258295 | 0.18% | 1468 |
| chr9 | 263817 | 0.19% | 1452 |
| chr10 | 259517 | 0.19% | 1455 |
| chr11 | 327254 | 0.24% | 1841 |
| chr12 | 271368 | 0.20% | 1436 |
| chr13 | 105489 | 0.09% | 585 |
| chr14 | 179368 | 0.17% | 987 |
| chr15 | 178116 | 0.17% | 994 |
| chr16 | 239496 | 0.27% | 1286 |
| chr17 | 323750 | 0.39% | 1767 |
| chr18 | 96262 | 0.12% | 543 |
| chr19 | 399459 | 0.68% | 2023 |
| chr20 | 171728 | 0.27% | 959 |
| chr21 | 73061 | 0.16% | 419 |
| chr22 | 170951 | 0.34% | 971 |
| chrX | 133430 | 0.09% | 719 |
| chrY | 4205 | 0.01% | 24 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31816 | 2 | 780 | 182.15 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF267FDQ.bed.gz | 349.08 KB | 3087d75a33dde507e0b8d6097153fc36 |
| ENCFF267FDQ.tabix.bed.gz | 314.62 KB | 37c058c2e34939caf22a51f6c0aea86b |
| ENCFF267FDQ.tabix.bed.gz.tbi | 175.59 KB | cbf0a483c4f20cc9c9b49be223b2fb73 |
| genomic_resource.yaml | 2.09 KB | bbb3faf402e79101c210a09ddf1df073 |
| statistics/ |