DNase-seq_ENCSR982XOK
DNase-seq ENCSR982XOK [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)"]
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| Id: | DNase-seq/ENCSR982XOK |
| Type: | position_score |
| Version: | 0 |
| Summary: |
DNase-seq ENCSR982XOK [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (71 years) output_type: peaks audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF158LPS|/files/ENCFF158LPS/} processed by DNase-seq ENCODE4 v3.0.0-alpha.2 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.29. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| DNase-seq_ENCSR982XOK | float |
DNase-seq_ENCSR982XOK |
DNase-seq ENCSR982XOK [biosample_summary="Homo sapiens dorsolateral prefrontal cortex tissue male adult (71 years)"]
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[0.0931, 12.1] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF267FDQ.bed.gz | 349.08 KB | 3087d75a33dde507e0b8d6097153fc36 |
| ENCFF267FDQ.bed.gz.dvc | 100.0 B | ba9509e7e6c1ddac6c054a0d8fdd745d |
| ENCFF267FDQ.tabix.bed.gz | 314.62 KB | 37c058c2e34939caf22a51f6c0aea86b |
| ENCFF267FDQ.tabix.bed.gz.dvc | 106.0 B | cdd5d5cb2379ab9fa86d5e99ccb7cd91 |
| ENCFF267FDQ.tabix.bed.gz.tbi | 175.59 KB | cbf0a483c4f20cc9c9b49be223b2fb73 |
| ENCFF267FDQ.tabix.bed.gz.tbi.dvc | 110.0 B | 97152d672384b8461b34e2492136da4a |
| genomic_resource.yaml | 2.09 KB | bbb3faf402e79101c210a09ddf1df073 |
| genomic_resource_original.yaml | 1.97 KB | 7e0f188ed464b4ba6a400553b86b0598 |
| statistics/ |