Resource

Id DNase-seq/ENCSR976XOYcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR976XOY [biosample_summary="Homo sapiens left forelimb tissue male embryo (81 days)"]
Description
Labels
  • accession: ENCSR976XOY
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_8300002/
  • biosample_summary: Homo sapiens left forelimb tissue male embryo (81 days)
  • date_created: 2017-11-01T21:26:56.453088+00:00
  • date_released: 2018-01-29
  • doi: 10.17989/ENCSR976XOY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male embryo (81 days)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR976XOY float

DNase-seq_ENCSR976XOY
DNase-seq ENCSR976XOY [biosample_summary="Homo sapiens left forelimb tissue male embryo (81 days)"]
 HISTOGRAM FOR DNase-seq_ENCSR976XOY [4, 3.96e+03]
n
28,002,839
mean
104
sd
154

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 280028390.87% 186001
chr1 2506346 1.01% 16648
chr2 2634419 1.09% 17482
chr3 1508408 0.76% 10009
chr4 1014917 0.53% 6736
chr5 1410560 0.78% 9363
chr6 1300078 0.76% 8638
chr7 1278964 0.80% 8506
chr8 1255451 0.87% 8342
chr9 1312176 0.95% 8723
chr10 1817803 1.36% 12065
chr11 1763687 1.31% 11719
chr12 1051629 0.79% 6982
chr13 647304 0.57% 4298
chr14 905598 0.85% 6015
chr15 1089896 1.07% 7233
chr16 962818 1.07% 6401
chr17 1176577 1.41% 7815
chr18 611053 0.76% 4065
chr19 951308 1.62% 6321
chr20 902328 1.40% 6005
chr21 449139 0.96% 2984
chr22 855793 1.68% 5686
chrX 556361 0.36% 3697
chrY 40226 0.07% 268
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 186001 7 450 150.55 150
global segment-length histogram

Files

Filename Size md5
ENCFF302YSW.bed.gz 1.72 MB c3a971d80bd9a96d016eb0405025aa28
ENCFF302YSW.tabix.bed.gz 1.47 MB 86b51cebe45387f302ac922baeb66499
ENCFF302YSW.tabix.bed.gz.tbi 404.89 KB 180e9778c61a64b0c1d1c605017233e0
genomic_resource.yaml 1.39 KB b20c50be8a70a965c06c28048bc14cc6
statistics/